View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5301_low_17 (Length: 267)
Name: NF5301_low_17
Description: NF5301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5301_low_17 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 20 - 267
Target Start/End: Original strand, 37271565 - 37271812
Alignment:
| Q |
20 |
ttggtacatttccaatatagagcggcatgcatgagatcctattctatacatagtactacaccattcaatatcctttacagtttgttttaagtcagatcca |
119 |
Q |
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| T |
37271565 |
ttggtacatttccaatatagagcagcatgcatgagatcctattctatacatagtactacaccattcaatatcctttacagtttgttttaagtcagatcca |
37271664 |
T |
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| Q |
120 |
ttggacattttatacatctaactgcatacatgtagattgtgtgctatacatctcaaacaagagaagccaactattacaatatacaacttttgcagtttat |
219 |
Q |
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| T |
37271665 |
ttggacattttatacatctaactgcatacatgtagattgtgtgctatacatctcaaacaagagaagccaactattacaatatacaacttttgcagtttat |
37271764 |
T |
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| Q |
220 |
ctcaaactgtcaaaataacaaactcatcatcatgccgtgcttctagac |
267 |
Q |
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| T |
37271765 |
ctcaaactgtcaaaataacaaactcatcatcatgccgtgcttctagac |
37271812 |
T |
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