View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5301_low_22 (Length: 250)
Name: NF5301_low_22
Description: NF5301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5301_low_22 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 25 - 250
Target Start/End: Complemental strand, 39923156 - 39922931
Alignment:
| Q |
25 |
atatatattgatcattgttaaaagcggttaaatcttcgtggcaataacataatgagaagaaaaaagattagtgtagatgtaaattgctatcaacaaatat |
124 |
Q |
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| T |
39923156 |
atatatattgatcattgttaaaagcggttaaatcttcgtggcaataacatgatgagaagaaaaaagattagtgtagatgtaaattgctatcaacaaaaat |
39923057 |
T |
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| Q |
125 |
gttgatgtaatattgcatataattacgcaaggttttctaccttatgtgcaaagaaataaactattggaccgtttgtttcctcggcaggaatgacgcagac |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39923056 |
gttgatgtaatattgcatataattacgcaaggttttctaccttatgtgcaaagaaataaactattggaccgtttgtttcctcggcaggaatgacgcagac |
39922957 |
T |
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| Q |
225 |
gcacatgtactagaagttgagatttt |
250 |
Q |
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|||||||||||||||||||||||||| |
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| T |
39922956 |
gcacatgtactagaagttgagatttt |
39922931 |
T |
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