View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5301_low_23 (Length: 244)
Name: NF5301_low_23
Description: NF5301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5301_low_23 |
 | |
|
| [»] scaffold0244 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 22076222 - 22076448
Alignment:
| Q |
1 |
cactattttatttgaaactttgccgcattttaatattgcgccttttaacctaatttaggtaattcagcaacaactccctttttgtgatattcctatcttt |
100 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
22076222 |
cactattttaatttaaactttgccgcattttaatattgcgccttttaatctaatttaggtaaatcagtaacaactcccttttggtgatattcctatcttt |
22076321 |
T |
|
| Q |
101 |
cataattcgaccgacttggtactccacgatagttggaatttggtagcacaagtacttctacactgtcctaaggttcaacatctcgatctttaccaggttt |
200 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22076322 |
cataatttgaccgacttggaactccacgatagttggaatttggtagcacaagtacttctacactgtcctaaggttcaacatctcgatctttaccaggttt |
22076421 |
T |
|
| Q |
201 |
gttaaatttaataatcatattaagttt |
227 |
Q |
| |
|
||||||| ||||||||||||| ||||| |
|
|
| T |
22076422 |
gttaaatataataatcatattcagttt |
22076448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 91 - 227
Target Start/End: Original strand, 22057040 - 22057176
Alignment:
| Q |
91 |
tcctatctttcataattcgaccgacttggtactccacgatagttggaatttggtagcacaagtacttctacactgtcctaaggttcaacatctcgatctt |
190 |
Q |
| |
|
||||||||||||||||| |||| ||||| ||||| |||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||| ||| |
|
|
| T |
22057040 |
tcctatctttcataatttgacccacttgcaactccgcgatagttgggattgggtagcacaagtacttctgcactgtcctaaggttcaacatctcgaactt |
22057139 |
T |
|
| Q |
191 |
taccaggtttgttaaatttaataatcatattaagttt |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
22057140 |
taccaggtttgttaaatttaataatcatattcagttt |
22057176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 158 - 221
Target Start/End: Original strand, 22065949 - 22066013
Alignment:
| Q |
158 |
ctacactgtcctaaggttcaacatctcgat-ctttaccaggtttgttaaatttaataatcatatt |
221 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||| |||||||||||||||||| |||||||| |
|
|
| T |
22065949 |
ctacactgtcctaaggttcaacgtctcgaaactttacaaggtttgttaaatttaattatcatatt |
22066013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0244 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0244
Description:
Target: scaffold0244; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 43 - 218
Target Start/End: Complemental strand, 6141 - 5966
Alignment:
| Q |
43 |
ttttaacctaatttaggtaattcagcaacaactccctttttgtgatattcctatctttcataattcgaccgacttggtactccacgatagttggaatttg |
142 |
Q |
| |
|
|||||||||||||||||| | ||||| |||| ||| | |||||||| ||||||||||||||| |||| |||||| ||||||| |||||||| ||||| |
|
|
| T |
6141 |
ttttaacctaatttaggtgaatcagccacaaggatcttatggtgatatttctatctttcataatttgacccacttggaactccacaatagttgggatttg |
6042 |
T |
|
| Q |
143 |
gtagcacaagtacttctacactgtcctaaggttcaacatctcgatctttaccaggtttgttaaatttaataatcat |
218 |
Q |
| |
|
|||||| ||||||| ||||| ||||| |||||||||||||| || ||| |||||||||||||||||| | |||||| |
|
|
| T |
6041 |
gtagcaaaagtactcctacattgtcccaaggttcaacatcttgaacttcaccaggtttgttaaatttcagaatcat |
5966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 87 - 221
Target Start/End: Complemental strand, 1025042 - 1024908
Alignment:
| Q |
87 |
atattcctatctttcataattcgaccgacttggtactccacgatagttggaatttggtagcacaagtacttctacactgtcctaaggttcaacatctcga |
186 |
Q |
| |
|
||||||||||||||||||||| ||| |||||| |||||| | |||||| ||||| || |||||| |||| ||||| |||||| ||||| ||||| | |
|
|
| T |
1025042 |
atattcctatctttcataatttgacatacttggagctccacaacagttggcatttgatattacaagttcttcaccactgccctaagcttcaaaatctcaa |
1024943 |
T |
|
| Q |
187 |
tctttaccaggtttgttaaatttaataatcatatt |
221 |
Q |
| |
|
||||| ||||||||||| ||||| ||||||||| |
|
|
| T |
1024942 |
aatttacgaggtttgttaagtttaagaatcatatt |
1024908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 87 - 221
Target Start/End: Original strand, 8311992 - 8312126
Alignment:
| Q |
87 |
atattcctatctttcataattcgaccgacttggtactccacgatagttggaatttggtagcacaagtacttctacactgtcctaaggttcaacatctcga |
186 |
Q |
| |
|
||||||||||||||||||||| ||| |||||| |||||| | ||||| ||||| | |||||| |||| ||||| |||||| ||||| ||||| | |
|
|
| T |
8311992 |
atattcctatctttcataatttgacatacttggagctccacaacagttgacatttgaaattacaagttcttcaccactgccctaagcttcaaaatctcaa |
8312091 |
T |
|
| Q |
187 |
tctttaccaggtttgttaaatttaataatcatatt |
221 |
Q |
| |
|
||||| ||||||||||| ||||| ||||||||| |
|
|
| T |
8312092 |
aatttacgaggtttgttaagtttaaaaatcatatt |
8312126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 219
Target Start/End: Original strand, 8316444 - 8316578
Alignment:
| Q |
85 |
tgatattcctatctttcataattcgaccgacttggtactccacgatagttggaatttggtagcacaagtacttctacactgtcctaaggttcaacatctc |
184 |
Q |
| |
|
|||||||||||||||||| |||| |||| |||||| ||| | |||| ||| |||||||| |||||| || | ||||| |||||| ||||| ||||| |
|
|
| T |
8316444 |
tgatattcctatctttcaaaatttgaccaacttggagctctgcaataggtggcgtttggtagtacaagttctccaccactgccctaagcttcaaaatctc |
8316543 |
T |
|
| Q |
185 |
gatctttaccaggtttgttaaatttaataatcata |
219 |
Q |
| |
|
| |||||| |||||||| | ||||| ||||||| |
|
|
| T |
8316544 |
aaactttacacggtttgttgagtttaagaatcata |
8316578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University