View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5301_low_28 (Length: 208)
Name: NF5301_low_28
Description: NF5301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5301_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 20 - 193
Target Start/End: Original strand, 42875642 - 42875815
Alignment:
| Q |
20 |
cccacggcatataaattttcgatacacgtcaaaggaggagaaggatcaggtatatcgatacgccctttcacaagcggatcataaacataatagccgctac |
119 |
Q |
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| T |
42875642 |
cccacggcgtataaattttcgatacacgtcaaaggaggagaaggatcaggtatatcgatacgccctttcacaagcggatcataaacataatagccgctac |
42875741 |
T |
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| Q |
120 |
catatgtgtaccggttgttacaacacaagaataagccgttggaacaaccgcatatgctgctgcctttacctttg |
193 |
Q |
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| T |
42875742 |
catatgtgtaccggttgttacaacacaagaataagccgttggaacaaccgcatatgctgctgcctttacctttg |
42875815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 63 - 177
Target Start/End: Complemental strand, 42751258 - 42751144
Alignment:
| Q |
63 |
gatcaggtatatcgatacgccctttcacaagcggatcataaacataatagccgctaccatatgtgtaccggttgttacaacacaagaataagccgttgga |
162 |
Q |
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| T |
42751258 |
gatcaggtatatggatacactctttaacgagtggatcataaacataatagacggtagcacatgtgtcccgattcttagaacacaagaataaaccattgga |
42751159 |
T |
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| Q |
163 |
acaaccgcatatgct |
177 |
Q |
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| T |
42751158 |
acaaccacatatgct |
42751144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 85 - 173
Target Start/End: Original strand, 1050207 - 1050295
Alignment:
| Q |
85 |
tttcacaagcggatcataaacataatagccgctaccatatgtgtaccggttgttacaacacaagaataagccgttggaacaaccgcata |
173 |
Q |
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| T |
1050207 |
tttcataagtggatcgtaaatataatagtcgataccataggtgtatcgattcttacaacacaagaataaaccgttggaacaaccgcata |
1050295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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