View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5301_low_3 (Length: 680)
Name: NF5301_low_3
Description: NF5301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5301_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 13 - 608
Target Start/End: Complemental strand, 40353778 - 40353178
Alignment:
| Q |
13 |
cagatgaaagcaaatcatggtcttctttattactttatctagaagatattcatacaatgtgaccaagatgaataccgagtctcaaacctacacaactttt |
112 |
Q |
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| T |
40353778 |
cagatgaaagcaaatcatggtcttctttattactttatcaagaagatattcatacaatgtgaccaagatgaatgccgagtctcaaacctacacaactttt |
40353679 |
T |
|
| Q |
113 |
gtatttacaacactctaaagatcaaaaaggtaaatttgtcactgctgtttttggacacagttatgggtaatttgagtaacataaatatgatctattatcc |
212 |
Q |
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| T |
40353678 |
gtatttacaacactctaaagaacaaaaaggtaaatttgtcactgctgtttttggacacagttatgtgtaatttgagtaacataaatatgatctattatcc |
40353579 |
T |
|
| Q |
213 |
gataatgttgagtaagataatgatagaccaaggtgtgataacnnnnnnnnnnacaaattgtatacggttgaacaatgtaagtttgatcataaacttagta |
312 |
Q |
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| T |
40353578 |
aataatgttgagtaagataatgatagaccaaggtgtgataatttttttttttacaaattgtatacggttgaacaatgtaagtttgatcataaacttagta |
40353479 |
T |
|
| Q |
313 |
caaaattgtttggagcggagcaatcgatgttactgaatttctctannnnnnncaaaaattaatc------aattgagatttcatcgtatatagattatgg |
406 |
Q |
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| T |
40353478 |
caaaattgtttggagcggagcaatcgatggtactgaatttctttattttttcaaaaaattaagcagttgaacttgagagttcttcgtatatagattatga |
40353379 |
T |
|
| Q |
407 |
agatagtgcaggaaatgaagaattgaattcatactagtgtgtcaatgtccctttattgttcatgtttaatatatttaattttaatttccgaaggtttgga |
506 |
Q |
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| T |
40353378 |
agatagtgcaggaaatgaagaattgaattcattctagtgtgtcaatgtccctttattgtttatgtttaatatatttaattttaatttccgaaggtttgga |
40353279 |
T |
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| Q |
507 |
tttttctttttagg--ataatgttaaagagatagatctactnnnnnnnngcttgttaaaatatcaaaaacttggattcaaacgtctttccttttctctct |
604 |
Q |
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| T |
40353278 |
tattt-tttttaggatataatgttaaagagatagatctact--aaaaaagcttgttaaaatttcaaaaacttggattcaaacctctttccttttctctct |
40353182 |
T |
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| Q |
605 |
ttaa |
608 |
Q |
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|||| |
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| T |
40353181 |
ttaa |
40353178 |
T |
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