View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5301_low_7 (Length: 422)
Name: NF5301_low_7
Description: NF5301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5301_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 5 - 415
Target Start/End: Complemental strand, 4776116 - 4775705
Alignment:
| Q |
5 |
tgcaagccctgaagcgagtattgcgctatctcaactccaccaactacaatggactctatctcacaagatcttcaaatacaagcctcacaagcttttgtga |
104 |
Q |
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|||||||| ||||| ||||||||||||||||||| ||||||| || |||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
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| T |
4776116 |
tgcaagccttgaagagagtattgcgctatctcaaatccaccatctccaatggactccatctcacaagatcttcaaatacaaacctcacaagcttttgtga |
4776017 |
T |
|
| Q |
105 |
tgcagattgggcaggagacacaattgacaggaaa----caggtgcttatttaatttatattggccctaatattatctcttggtcatgcaagaagcaacca |
200 |
Q |
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|||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
4776016 |
tgcagattaggcaggagacacaattgacaggaaatcaacaggtgcttatttaatttattttggccctaatattatctcttggtcatgcaagaagcaacca |
4775917 |
T |
|
| Q |
201 |
acaattgcaaaatcgtcaactgaagctgaatatcgtactatagcagccactactcaagaattaatatgggttcaaaacttgttacaagaacttcaaattc |
300 |
Q |
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| T |
4775916 |
acaattgcaaaatcgtcaactgaagctgaatatcgtactatagcagccactactcaagaattaatatgggttcaaaacttgttacaagaacttcaaattc |
4775817 |
T |
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| Q |
301 |
cattaacggcaccaacaatattcttagaaaacattggagctacatctctatgtgcaaaccctgtctttcagtactctaggatgaagcatattgccataga |
400 |
Q |
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| T |
4775816 |
cattaactgcaccaacaatattctaagacaacattggagctacatatctatgtgcaaaccctgtctttc---actctaggatgaagcatattgccataga |
4775720 |
T |
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| Q |
401 |
ttatcattttcttcg |
415 |
Q |
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| T |
4775719 |
ttatcattttgttcg |
4775705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 82 - 410
Target Start/End: Complemental strand, 43061400 - 43061071
Alignment:
| Q |
82 |
acaagcctcacaagcttttgtgatgcagattgggcaggagacacaattgacagga----aacaggtgcttatttaatttatattggccctaatattatct |
177 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||| |
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| T |
43061400 |
acaagcctcacaaacttttgtgatgcagattgggcaggagacacaattgacaggatatgaacaggtgcttatttcatttattttggccctaatattatct |
43061301 |
T |
|
| Q |
178 |
cttggtcatgcaagaagcaaccaacaattgcaaaatcgtcaactgaagctgaatatcgtactatagcagccactactcaagaattaatatgggttcaaaa |
277 |
Q |
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| T |
43061300 |
cttggtcatgcaagaagcagccaacagttgcaaaatcatcaactgaagctgaatatcggactatagcagccactactcaggaattaatatgggttcaaaa |
43061201 |
T |
|
| Q |
278 |
cttgttacaagaacttcaaattccattaacggcaccaacaatattcttagaaaacattggagctacatctctatgtgcaaaccctgtctttcagtactct |
377 |
Q |
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| T |
43061200 |
cttgttacaagaacttcaaattccattaactgcaccaacgatattctcagacaacattagagctacatatctatgtgcaaaccctgtttttc---actat |
43061104 |
T |
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| Q |
378 |
aggatgaagcatattgccatagattatcatttt |
410 |
Q |
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| T |
43061103 |
aggatgaaacacattgccatagattatcatttt |
43061071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 330 - 370
Target Start/End: Original strand, 45192874 - 45192914
Alignment:
| Q |
330 |
aacattggagctacatctctatgtgcaaaccctgtctttca |
370 |
Q |
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| T |
45192874 |
aacattggagctacatatctatgtgcaaaccctgtccttca |
45192914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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