View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5302-Insertion-1 (Length: 1050)
Name: NF5302-Insertion-1
Description: NF5302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5302-Insertion-1 |
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Alignment Details
Target: chr3 (Bit Score: 397; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 247 - 729
Target Start/End: Complemental strand, 8955354 - 8954870
Alignment:
| Q |
247 |
caacccgacattatggacagattagttgttttgatatgagggggtatagttgttccttcctttaacaatggttgaatgtgtcgcttggattactttttcg |
346 |
Q |
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| T |
8955354 |
caacccgacattatggacagaacagttgttttgatatgagggggtatagttgtttcttcctttaacaatggttgaatgtgtcgcttggattactttttcg |
8955255 |
T |
|
| Q |
347 |
tagtgtgtatcatatataacttaggttccttcacttgtaatgttatttgaagcataggtataaataaaagattactcgtaaaaatgaggattccgtattc |
446 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
8955254 |
tagtgtgtatcatatataacataggttccttcacttgtaatgttatttgaagcataggtataaataaaagattactcataaaaatgaggattccatattc |
8955155 |
T |
|
| Q |
447 |
cctttatgatctcagcattgtaggagtattctacccttgtaatgatttcattcaaaaatccccgattgagagattctannnnnnnatatgcatgtattca |
546 |
Q |
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|||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
8955154 |
ccttcatgatcttatcattgtaggagtattctacccttgtaatgatttcattcaaaaatccttgattgagagattctatttttttatatgcatgtattcc |
8955055 |
T |
|
| Q |
547 |
tatgaaagtaattgaataaaatttgttattaattgatgttatggacgcttgagtcatacgttgagcacgggcggaacc--atgtttttatcgcacaaagt |
644 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||| |
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| T |
8955054 |
tatgaaagtaattgaataaaatttgttattaattgatgttatggacgtttgagtcgtacgttgagcacgggcggaaccatatgtttttatcgcacaaagt |
8954955 |
T |
|
| Q |
645 |
cagcgcttcatgagcctggtgtcattcaattggttttcaatgggtgaaaccatgggtttgatgtttgagattgattccctcttga |
729 |
Q |
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| T |
8954954 |
cagcgcttcatgagcctggtgtcattcaattggttttcaatgggtgaaaccatgggtttgatgtttgagattgattccctcttga |
8954870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 195; E-Value: 1e-105
Query Start/End: Original strand, 8 - 246
Target Start/End: Complemental strand, 8955669 - 8955431
Alignment:
| Q |
8 |
ataattacactattaactactactttcatccctaaatacaaaactctcttgaatttttatcaatccctttttataagaccgcatttaaaattttaaccaa |
107 |
Q |
| |
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||||||||||| |||||||||||||| |||||||||||||| || ||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
8955669 |
ataattacacttttaactactacttttatccctaaatacaatacgctcttgaatatttatcaatccctttttataagaccgtctttaaaattttaaccaa |
8955570 |
T |
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| Q |
108 |
aatttggcagtggcttcatccttggtggagtaaaagtgtttttgtcccttggcgccatggtaattgagctccactccctgatgttgtcctagcatggatc |
207 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
8955569 |
aatttagcagtggcttcatccttggtggagtaaaagtgtttttgtcccttgtcgccatggtaattgagttccactccctgatgttgtcctagcatggatc |
8955470 |
T |
|
| Q |
208 |
aacaacaaatctctaatggtgagaagattgtctctttaa |
246 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||| |
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| T |
8955469 |
aacaccaaatctctaatggtgagaagattgtctctttaa |
8955431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 772 - 941
Target Start/End: Complemental strand, 8948726 - 8948560
Alignment:
| Q |
772 |
ggtgttaacaccattaccaactctaagc-gtaagttgtcagaaaaccaacttccccaacattgtaccactctcatcatgaatactaacattgtcccttcc |
870 |
Q |
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|||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||| ||||| |||| |
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| T |
8948726 |
ggtgttaacaccattaccgactctaaggtgtaagttgtcagaaaaccaacttccc-aacattgtacaactcccatcatgaatactaacaatgtcc-ttcc |
8948629 |
T |
|
| Q |
871 |
accacactgacccatcccgatcacaaggctgaaggccgt-cctcaacccccaccaatatcaagcagttagaa |
941 |
Q |
| |
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|||||||||||||||||||||||||| |||||| ||||| |||||| ||||||| ||||||||||||||||| |
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| T |
8948628 |
accacactgacccatcccgatcacaaagctgaa-gccgtccctcaa-ccccacc-atatcaagcagttagaa |
8948560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 772 - 904
Target Start/End: Original strand, 24573551 - 24573682
Alignment:
| Q |
772 |
ggtgttaacaccattaccaactctaag-cgtaagttgtcagaaaaccaacttccccaacattgtaccactctcatcatgaatactaacattgtcccttcc |
870 |
Q |
| |
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|||||||||||||||||| |||||||| || |||||||| ||||||||||| |||||||| || || ||| |||||||||| | ||| | ||| |||| |
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| T |
24573551 |
ggtgttaacaccattaccgactctaagacgcaagttgtctgaaaaccaact-ccccaacactgaactactgcgatcatgaatattgacaatatcc-ttcc |
24573648 |
T |
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| Q |
871 |
accacactgacccatcccgatcacaaggctgaag |
904 |
Q |
| |
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|||||||||||||||||||| ||| |||||||| |
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| T |
24573649 |
accacactgacccatcccgactacagggctgaag |
24573682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 772 - 830
Target Start/End: Complemental strand, 33260398 - 33260340
Alignment:
| Q |
772 |
ggtgttaacaccattaccaactctaag-cgtaagttgtcagaaaaccaacttccccaaca |
830 |
Q |
| |
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|||||||||||||||||| |||||||| ||||||||||| |||||||||| ||||||||| |
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|
| T |
33260398 |
ggtgttaacaccattaccgactctaagacgtaagttgtctgaaaaccaac-tccccaaca |
33260340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 772 - 830
Target Start/End: Complemental strand, 33280557 - 33280499
Alignment:
| Q |
772 |
ggtgttaacaccattaccaactctaag-cgtaagttgtcagaaaaccaacttccccaaca |
830 |
Q |
| |
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|||||||||||||||||| |||||||| ||||||||||| |||||||||| ||||||||| |
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| T |
33280557 |
ggtgttaacaccattaccgactctaagacgtaagttgtctgaaaaccaac-tccccaaca |
33280499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 772 - 904
Target Start/End: Original strand, 29133301 - 29133432
Alignment:
| Q |
772 |
ggtgttaacaccattaccaactctaag-cgtaagttgtcagaaaaccaacttccccaacattgtaccactctcatcatgaatactaacattgtcccttcc |
870 |
Q |
| |
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||||| |||||||||||||| |||||| || ||| |||| |||||||||||||| ||||| | || ||| ||||| ||||||| || | ||| |||| |
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| T |
29133301 |
ggtgtcaacaccattaccaagtctaagacgcaagctgtctaaaaaccaacttccc-aacatcgaactacttccatcacgaatactggcaatatcc-ttcc |
29133398 |
T |
|
| Q |
871 |
accacactgacccatcccgatcacaaggctgaag |
904 |
Q |
| |
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|||||||||| || |||||| |||| |||||||| |
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| T |
29133399 |
accacactgaaccctcccgaccacagggctgaag |
29133432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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