View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5302_high_1 (Length: 422)
Name: NF5302_high_1
Description: NF5302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5302_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 42934766 - 42934524
Alignment:
| Q |
1 |
ctgcatattcagtagaatatcatatcagaaaatgttaaaattaatggtaaaaaatctatcttaggatatttgcatttttaattgaagggttggttaaatc |
100 |
Q |
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| T |
42934766 |
ctgcatattcagcagaatatcatatcagaaaatgttaaaattaatggtaaaaaatctatcttaggatatttgcatttttaattgaagggttggttaaatc |
42934667 |
T |
|
| Q |
101 |
tgtgcttttgaggggatattagcagaggtacagaatcctaaaactagagttgtgattggttttatttgtggatatggacaattagagtaattatgttaga |
200 |
Q |
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| T |
42934666 |
tgtgcttttgaggggatattagcagaggtacagaatcctaaaactagagttgtgattggttttatttgtggatatggacaattagagtaattatgttaga |
42934567 |
T |
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| Q |
201 |
ttcaattatttgcatgacataaaagacaattaaatgtaaactt |
243 |
Q |
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| T |
42934566 |
ttccattatttgcatgacataaaagacaattaaatgtaaactt |
42934524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 228 - 402
Target Start/End: Complemental strand, 42934509 - 42934319
Alignment:
| Q |
228 |
aattaaatgtaaacttaagaagtagtactatcatggaattaatgcattttatgtcattcaatactctctttttcgtccaaggtgtgagatggatctgcta |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42934509 |
aattaaatgtaaacttaagaagtagtactatcatggaattaatgcattttatgtcattcaatactctctttttcgtccaaggtgtgagatggatctgcta |
42934410 |
T |
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| Q |
328 |
attagttccaccataaaaactttct----------------acttctattagtggatttcattcagcacatgttatatccaaacatacata |
402 |
Q |
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||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
42934409 |
attagttccaccataaaaactttctagttctaaaaggtataacttctattagttgatttcattcagcacatgttatatccaaacatacata |
42934319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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