View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5302_high_3 (Length: 351)
Name: NF5302_high_3
Description: NF5302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5302_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 86 - 221
Target Start/End: Original strand, 55113639 - 55113774
Alignment:
| Q |
86 |
gttgcagtgttttcgtatatatgcatgtgcttgaacatgtgaaacgatctcaaaaatgcatatgcaagaagataagctcaaataattccatggaaacaga |
185 |
Q |
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| T |
55113639 |
gttgcagtgttttcgtatatatgcatgtgcttgaacatgtgaaacgatctcacaaatgcatatgcgagaagataagctcaaataattccatggaaacaga |
55113738 |
T |
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| Q |
186 |
aatccaaaatttcaaatgatgttgagttgttgaagc |
221 |
Q |
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| T |
55113739 |
aatccaaaatttcaaatgatgttgagttgttcaagc |
55113774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 249 - 338
Target Start/End: Original strand, 55113806 - 55113896
Alignment:
| Q |
249 |
caggttccgcaaaatgattaagaacagcaaac-gaagcagaagtttccaattcaaaatccctagaattatatatgaaaacgttttttctga |
338 |
Q |
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| T |
55113806 |
caggttccgcaaaatgattaagaacagcaaaaagaagcagaagtttccaattcaaaatccctagaattatatatgaaaacgttttttctga |
55113896 |
T |
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