View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5302_high_4 (Length: 323)
Name: NF5302_high_4
Description: NF5302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5302_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 106; Significance: 5e-53; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 172 - 309
Target Start/End: Complemental strand, 8955801 - 8955664
Alignment:
| Q |
172 |
tgtaacaaacaccttcattttatgcatattttcagataatatatcatttaatgtagaactctcaaaaatctatttataaagacctttagtggaacatggt |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| | |
|
|
| T |
8955801 |
tgtaacaaacaccttcattttatgcatatttttagataatatatcattcaatgtagaactctcaaaaatctatttataaagacctgtagtggaacatgtt |
8955702 |
T |
|
| Q |
272 |
tttcaacaccaatcaaattggtgatacttcatataatt |
309 |
Q |
| |
|
||||||||| |||||||| || ||| |||||||||||| |
|
|
| T |
8955701 |
tttcaacactaatcaaatcggggattcttcatataatt |
8955664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 92
Target Start/End: Complemental strand, 8955902 - 8955828
Alignment:
| Q |
17 |
aacatttgaaatggagtgtttgaaatttgactcaaacaaataagctttgcaaccattttaaaatttgagttgtgat |
92 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
8955902 |
aacatttgaaatggagtgtttgaaatttgactcaaacaaataagctttgcaa-cattttaaaatttgagttgtgat |
8955828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 134
Target Start/End: Complemental strand, 29487095 - 29487057
Alignment:
| Q |
96 |
cacatatttttataaaaagttactatttataacccttaa |
134 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
29487095 |
cacatatttttataaaaagttactacttaaaacccttaa |
29487057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 169
Target Start/End: Complemental strand, 31902774 - 31902712
Alignment:
| Q |
107 |
ataaaaagttactatttataacccttaaagggtgctcgagggcacttgttaacatttttcata |
169 |
Q |
| |
|
||||||| |||||||||| | |||||||| ||||||| ||||||| ||||||||||| |||| |
|
|
| T |
31902774 |
ataaaaatttactatttaaagtccttaaagagtgctcgggggcactcgttaacattttccata |
31902712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 124
Target Start/End: Complemental strand, 31702776 - 31702748
Alignment:
| Q |
96 |
cacatatttttataaaaagttactattta |
124 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
31702776 |
cacatatttttataaaaagttactattta |
31702748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 124
Target Start/End: Original strand, 44442320 - 44442348
Alignment:
| Q |
96 |
cacatatttttataaaaagttactattta |
124 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
44442320 |
cacatatttttataaaaagttactattta |
44442348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University