View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5302_low_2 (Length: 357)
Name: NF5302_low_2
Description: NF5302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5302_low_2 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 67 - 357
Target Start/End: Complemental strand, 42935038 - 42934763
Alignment:
| Q |
67 |
ctccaatcaataacgtagatgcaataggaaagagcaagaaaaattctgaaatctatgtcttacaaaagaaaaatactagtctaaagtttggacacatcta |
166 |
Q |
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| T |
42935038 |
ctccaatcaataacgtagatgcaataggaaagagcaagaaaaattctgaaatctatgtcttacaaaagaaaaatactagtctaaagtttggacacatcta |
42934939 |
T |
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| Q |
167 |
gtgccaatctaagtctaattaacaactagaaaaaccagcaagaaaaattctgcaatcttaagctaatttgaaagaataaacaaattgctgctacaccttt |
266 |
Q |
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| T |
42934938 |
gtgccaatctaagtctaattaacaactagaaaaa-------------ttctgcaatcttaagctaatttgaaagaataaacaaa--gctgctacaccttt |
42934854 |
T |
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| Q |
267 |
ccaatcaatgcagtcctctgcctattcttttattactgccttgcctatcttattcacaagaccccttcatcatcaccatcaccatcactgc |
357 |
Q |
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| T |
42934853 |
ccaatcaatgcagtcctctgcctattcttttattactgccttgcctatcttattcacaagaccccttcatcatcatcatcaccatcactgc |
42934763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 50
Target Start/End: Complemental strand, 42935096 - 42935061
Alignment:
| Q |
15 |
gaaatgaaaaatcggaaataaacgttgttgaagccg |
50 |
Q |
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| T |
42935096 |
gaaatgaaaaatcggaaataaacgttgttgaagccg |
42935061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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