View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5302_low_6 (Length: 253)
Name: NF5302_low_6
Description: NF5302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5302_low_6 |
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| [»] scaffold0118 (1 HSPs) |
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| [»] scaffold0180 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 26456412 - 26456657
Alignment:
| Q |
1 |
tagcaacttacaaaacaagtaactagtgaaaatgatggagagagagcacttttcattaattttccagaattagaccactcaaattaacatcagagagatt |
100 |
Q |
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| T |
26456412 |
tagcaacttacaaaacaagtaactagtgaaaa-gatggagagagagcactttccattaattttccagaattagaccactcaaattaacatcggagagatt |
26456510 |
T |
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| Q |
101 |
caaacctgagactacgaggaggagcatactttcaaattccaagtcaatatcatgaggctgtacttagtgcttaattagaatgcatgtccatctcttagca |
200 |
Q |
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|||| ||||||||||||||||||||| ||||| |||| ||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
26456511 |
caaatctgagactacgaggaggagcacacttttaaatcttaagccaatatcaccaggccgtacttagtgcttaattagaatgcatgtccatctcttagca |
26456610 |
T |
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| Q |
201 |
ccttcttggattggattgttgctctgtacggttaagagaattattta |
247 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26456611 |
ccttcttggattggattgttgctctgtacggttaagagaattattta |
26456657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 26450026 - 26450098
Alignment:
| Q |
1 |
tagcaacttacaaaacaagtaactagtgaaaatgatggagagaga--gcacttttcattaattttccagaatt |
71 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||| |||||| |
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| T |
26450026 |
tagcaacttacaaaacaagtaactagtgaaaatgatggagagagaaggtactttccattaattttcaagaatt |
26450098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 148
Target Start/End: Complemental strand, 51954219 - 51954139
Alignment:
| Q |
68 |
aattagaccactcaaattaacatcagagagattcaaacctgagactacgaggaggagcatactttcaaattccaagtcaat |
148 |
Q |
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| T |
51954219 |
aattagcccacccaaattgacaccggagataatcaaacctgagacctcgaggaggagcatactcccaagtcccaagtcaat |
51954139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 150
Target Start/End: Complemental strand, 27266854 - 27266782
Alignment:
| Q |
78 |
ctcaaattaacatcagagagattcaaacctgagactacgaggaggagcatactttcaaattccaagtcaatat |
150 |
Q |
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| T |
27266854 |
ctcaatttgacatcagagagaatcaaacctgagattttgagaatgagcatactttcaaattccaagtcaatat |
27266782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 78 - 153
Target Start/End: Complemental strand, 27255428 - 27255353
Alignment:
| Q |
78 |
ctcaaattaacatcagagagattcaaacctgagactacgaggaggagcatactttcaaattccaagtcaatatcat |
153 |
Q |
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| T |
27255428 |
ctcaatttgacatcagagaaaatcaaacctgagactttgagaaggagtatacttccaaattccaagtcaatatcat |
27255353 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0118 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0118
Description:
Target: scaffold0118; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 130
Target Start/End: Original strand, 41604 - 41666
Alignment:
| Q |
68 |
aattagaccactcaaattaacatcagagagattcaaacctgagactacgaggaggagcatact |
130 |
Q |
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| T |
41604 |
aattagcccacccaaattgacatcagagagaattgaacctgagacctcgaggaggagcatact |
41666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 126
Target Start/End: Original strand, 10445110 - 10445168
Alignment:
| Q |
68 |
aattagaccactcaaattaacatcagagagattcaaacctgagactacgaggaggagca |
126 |
Q |
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| T |
10445110 |
aattagcccactcaaattagcaccagagagaatcgaacctgagacctcgaggaggagca |
10445168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 126
Target Start/End: Original strand, 51903849 - 51903907
Alignment:
| Q |
68 |
aattagaccactcaaattaacatcagagagattcaaacctgagactacgaggaggagca |
126 |
Q |
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| T |
51903849 |
aattagcccactcaaattgacaccggagagaatcgaacctgagaccacgaggaggagca |
51903907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 27259256 - 27259208
Alignment:
| Q |
78 |
ctcaaattaacatcagagagattcaaacctgagactacgaggaggagca |
126 |
Q |
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| T |
27259256 |
ctcaaattgacatcagagagaatcaaacctgaaacctcgaggaggagca |
27259208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 149
Target Start/End: Complemental strand, 4226156 - 4226086
Alignment:
| Q |
79 |
tcaaattaacatcagagagattcaaacctgagactacgaggaggagcatactttcaaattccaagtcaata |
149 |
Q |
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|||||||||||||||||| | || ||||||| || ||||||||| ||| | |||||||||||||||||| |
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| T |
4226156 |
tcaaattaacatcagagataatcgaacctgaaaccttgaggaggagtatattctcaaattccaagtcaata |
4226086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0180 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0180
Description:
Target: scaffold0180; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 130
Target Start/End: Original strand, 19943 - 19995
Alignment:
| Q |
78 |
ctcaaattaacatcagagagattcaaacctgagactacgaggaggagcatact |
130 |
Q |
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|||||||||||| |||||||| || |||||||||| ||||||||||||||| |
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| T |
19943 |
ctcaaattaacaccagagagaatcgaacctgagaccttgaggaggagcatact |
19995 |
T |
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