View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5303-Insertion-2 (Length: 409)

Name: NF5303-Insertion-2
Description: NF5303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5303-Insertion-2
NF5303-Insertion-2
[»] chr7 (4 HSPs)
chr7 (6-183)||(4856288-4856465)
chr7 (289-391)||(4856572-4856674)
chr7 (336-384)||(36647449-36647497)
chr7 (338-374)||(34510834-34510870)
[»] chr1 (2 HSPs)
chr1 (337-394)||(18705671-18705728)
chr1 (338-394)||(29849953-29850007)
[»] chr3 (1 HSPs)
chr3 (336-374)||(52737791-52737829)
[»] chr8 (1 HSPs)
chr8 (336-378)||(4676294-4676336)
[»] chr6 (1 HSPs)
chr6 (336-374)||(787437-787475)
[»] chr5 (1 HSPs)
chr5 (336-374)||(35309109-35309147)


Alignment Details
Target: chr7 (Bit Score: 170; Significance: 4e-91; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 6 - 183
Target Start/End: Original strand, 4856288 - 4856465
Alignment:
Q  6 caatcacaagaaatcgaacaaacagaatcaaaaacgaaaacgcaagactcgcacagattcgaagcaagaattgaacaagaattgtgaaactgaatcacga 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  4856288 caatcacaagaaatcgaacaaacagaatcaaaaacgaaaacgcaagactcgcacagattcgaagcaagaattgaacgagaattgtgaaactgaatcacga 4856387  T
Q  106 aatgtaattacgcgagaaaatcgaaacacaaaagatgaattgcaataaggaaccctaagatttgggaaaaaggtgaag 183  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  4856388 aatgtaattacgcgagaaaatcgaaacacaaaagatgaattgctataaggaaccctaagatttgggaaaaaggtgaag 4856465  T

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Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 289 - 391
Target Start/End: Original strand, 4856572 - 4856674
Alignment:
Q  289 tcataacagaaaattagaataaggaagaaagggaaagtgagaaaatgtatccttcaaggtgaataccagatttgctctgataccatattataaaacttgg 388  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  4856572 tcataacagaaaattagaataaggaagaaagggaaagtgagaaaatgtatccttcaagatgaataccagaattgctctgataccatattataaaacttgg 4856671  T
Q  389 cat 391  Q
    |||    
T  4856672 cat 4856674  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 336 - 384
Target Start/End: Original strand, 36647449 - 36647497
Alignment:
Q  336 tatccttcaaggtgaataccagatttgctctgataccatattataaaac 384  Q
    ||||||||||| ||||||||||||| ||||||||||||||||| |||||    
T  36647449 tatccttcaagatgaataccagattagctctgataccatattagaaaac 36647497  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 374
Target Start/End: Complemental strand, 34510870 - 34510834
Alignment:
Q  338 tccttcaaggtgaataccagatttgctctgataccat 374  Q
    |||||||||||| |||||||||| |||||||||||||    
T  34510870 tccttcaaggtggataccagattagctctgataccat 34510834  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 337 - 394
Target Start/End: Original strand, 18705671 - 18705728
Alignment:
Q  337 atccttcaaggtgaataccagatttgctctgataccatattataaaacttggcatcca 394  Q
    ||||||||||||| |||||||||| ||||||||||||| ||| ||||| |||||||||    
T  18705671 atccttcaaggtggataccagattagctctgataccatgttagaaaacatggcatcca 18705728  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 338 - 394
Target Start/End: Original strand, 29849953 - 29850007
Alignment:
Q  338 tccttcaaggtgaataccagatttgctctgataccatattataaaacttggcatcca 394  Q
    |||||||||||| ||||||  |||||||||||||||| |||| |||| |||||||||    
T  29849953 tccttcaaggtggatacca--tttgctctgataccatgttatgaaacatggcatcca 29850007  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 336 - 374
Target Start/End: Original strand, 52737791 - 52737829
Alignment:
Q  336 tatccttcaaggtgaataccagatttgctctgataccat 374  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  52737791 tatccttcaaggtggataccagatttgctctgataccat 52737829  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 378
Target Start/End: Complemental strand, 4676336 - 4676294
Alignment:
Q  336 tatccttcaaggtgaataccagatttgctctgataccatatta 378  Q
    |||||||||||||| ||||||| || |||||||||||||||||    
T  4676336 tatccttcaaggtggataccaggttagctctgataccatatta 4676294  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 374
Target Start/End: Complemental strand, 787475 - 787437
Alignment:
Q  336 tatccttcaaggtgaataccagatttgctctgataccat 374  Q
    |||||||||||||| |||||| |||||||||||||||||    
T  787475 tatccttcaaggtggataccatatttgctctgataccat 787437  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 374
Target Start/End: Original strand, 35309109 - 35309147
Alignment:
Q  336 tatccttcaaggtgaataccagatttgctctgataccat 374  Q
    |||||||||||||| |||||||||| |||||||||||||    
T  35309109 tatccttcaaggtggataccagattagctctgataccat 35309147  T

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