View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5303-Insertion-4 (Length: 265)
Name: NF5303-Insertion-4
Description: NF5303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5303-Insertion-4 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 37 - 265
Target Start/End: Original strand, 43314565 - 43314793
Alignment:
| Q |
37 |
ctagaataaataaagactaaaattttgatgaaatccaattgaattggcatacaggaatcaagaagttgctttaattaccacatgttttcgtccacggatt |
136 |
Q |
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| T |
43314565 |
ctagagtaaataaagactaaaattttgatgaaatccaattgaattggcatacaggaatcaagaagttgatttaattaccacatgttttcgtccacggatt |
43314664 |
T |
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| Q |
137 |
tctggctgatacatgttctccttgtcgatggaattacgggctcgccttgaccggacaacagcttgagctctcattagagcttgcatactgtgaagtattg |
236 |
Q |
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| T |
43314665 |
tctggctgacacatgttctccttgtcgatggaattacgggctcgtcttgactggacaacagcttgagctctcattagagcttgcatactatgaagtgttg |
43314764 |
T |
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| Q |
237 |
cagaaactctttttctaactaggaaccct |
265 |
Q |
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| T |
43314765 |
ctgcaactctttttctaactaggaaccct |
43314793 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 4609743 - 4609687
Alignment:
| Q |
199 |
ttgagctctcattagagcttgcatactgtgaagtattgcagaaactctttttctaac |
255 |
Q |
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| T |
4609743 |
ttgagctctaaatagagcttgcatactgtgaagagttgcagcagctctttttctaac |
4609687 |
T |
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