View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5303-Insertion-5 (Length: 165)
Name: NF5303-Insertion-5
Description: NF5303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5303-Insertion-5 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 155; Significance: 1e-82; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 1e-82
Query Start/End: Original strand, 7 - 165
Target Start/End: Complemental strand, 41380694 - 41380536
Alignment:
| Q |
7 |
agcatatttccttaattttgcgaatatgcaaataaagtgtcaatcaaaatgacctatatcttataatatcatacataaaattaacatgtgatctttcacg |
106 |
Q |
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| T |
41380694 |
agcatatttccttaattttgcgaatatgcaaataaagtgtcaatcaaaatgacctatatcttataatatcatacataaaattaacatgtgatctttcacg |
41380595 |
T |
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| Q |
107 |
tagatttagtattttacctcaactccacattaacaacttgtaatatcaatgaaacaaat |
165 |
Q |
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| T |
41380594 |
tagatttagtattttacctcaactccacactaacaacttgtaatatcaatgaaacaaat |
41380536 |
T |
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Target: chr4 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 7 - 138
Target Start/End: Original strand, 34286468 - 34286599
Alignment:
| Q |
7 |
agcatatttccttaattttgcgaatatgcaaataaagtgtcaatcaaaatgacctatatcttataatatcatacataaaattaacatgtgatctttcacg |
106 |
Q |
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|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | | |
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| T |
34286468 |
agcacatttccttaattttgagaatatgcaaataaagtgtcaatcaaaatgacctatatcttataacatcatacataaaattaacatgtgatctttgatg |
34286567 |
T |
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| Q |
107 |
tagatttagtattttacctcaactccacatta |
138 |
Q |
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| T |
34286568 |
tagatttagtattttacatcaactccacatta |
34286599 |
T |
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