View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5303_high_10 (Length: 402)
Name: NF5303_high_10
Description: NF5303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5303_high_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 13 - 386
Target Start/End: Original strand, 19157618 - 19157990
Alignment:
| Q |
13 |
aatataaaagtggtaagatggtggcgaaaatcattggaaacgtgggttaaaacataacaattagaagaaagnnnnnnnngagttgtgtgtgagttaaact |
112 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
19157618 |
aatatagaagtggtaagatggtggcgaaaatcatagaaaatgtgggttaaaacataacaattagaagaa-gaaaaaaaagagttgtgtgtgagttaaact |
19157716 |
T |
|
| Q |
113 |
aaagtgtcgtgcagttgtcgtgctattggctctcgtgccatatagcactgctcaaaaattaaaatagcgaacaaagttttggacgnnnnnnnttaaatat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| | |||| |||||||| |
|
|
| T |
19157717 |
aaagtgtcgtgcagttgtcgtgctattggctctcgtgccatatagcactgcttaaaaattaaaatagcaaacaaagttatagacgaaaaaaattaaatat |
19157816 |
T |
|
| Q |
213 |
tgattatttttccccactaaatttattgaagaaattagtgaaattttatatttttctcctctctaaatacctgccattggttttttaatcatttatttat |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
19157817 |
tgattatttttccccactaaatttattgaagaaattagtgaaattttatatttttctcctctctaaatacctgccattggctttttaatcatttatttat |
19157916 |
T |
|
| Q |
313 |
tatgcaagtagatataatatcaactatttatttctttatcaatcattcatttgttaacttttagagtgagcata |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19157917 |
tatgcaagtagatataatatcaactatttatttctttatcaatcattcatttgttaacttttagagtgagcata |
19157990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 40943820 - 40943885
Alignment:
| Q |
13 |
aatataaaagtggtaagatggtggcgaaaatcattggaaacgtgggttaaaacataacaattagaa |
78 |
Q |
| |
|
|||||| ||||||||||||||||||| ||| ||| | | ||||||||||||||||||||||||||| |
|
|
| T |
40943820 |
aatatagaagtggtaagatggtggcggaaaccatcgaagacgtgggttaaaacataacaattagaa |
40943885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 165
Target Start/End: Original strand, 40943931 - 40943964
Alignment:
| Q |
132 |
gtgctattggctctcgtgccatatagcactgctc |
165 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |
|
|
| T |
40943931 |
gtgctattgactctcgtgccatatagcactgctc |
40943964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 45245233 - 45245296
Alignment:
| Q |
13 |
aatataaaagtggtaagatggtggcgaaaatcattggaaacgtgggttaaaacataacaattag |
76 |
Q |
| |
|
|||||| ||||||| |||||| |||| ||| ||||||| |||||||||||||||||| |||||| |
|
|
| T |
45245233 |
aatatagaagtggtgagatgggggcggaaaccattggagacgtgggttaaaacataataattag |
45245296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University