View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5303_high_13 (Length: 358)
Name: NF5303_high_13
Description: NF5303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5303_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 108; Significance: 4e-54; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 109 - 224
Target Start/End: Complemental strand, 15262061 - 15261946
Alignment:
| Q |
109 |
ctagcaagattgtggtcgtcacttcattattaaatccatatctcaacaaaatatttattattcagcatgtaattttttatagaagaaaattgcaaatcct |
208 |
Q |
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| T |
15262061 |
ctagcaagaatgtggttgtcacttcattattaaatccatatctcaacaaaatatttattattcagcatgtaattttttatagaagaaaattgcaaatcct |
15261962 |
T |
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| Q |
209 |
cccatacaattttttc |
224 |
Q |
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| T |
15261961 |
cccatacaattttttc |
15261946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 225 - 335
Target Start/End: Complemental strand, 15261913 - 15261803
Alignment:
| Q |
225 |
cacacacaattgcaatttatacaaggactaaattccaaacctgtcaattacaatttttgtattgaaaaattgtaaaccatctcatcatgacacacaaggt |
324 |
Q |
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| T |
15261913 |
cacacacaattgcaatttatacaaggactaaattccaaacctgtcaattacaatttttgtattgaaaaattgtaaaccatctcatcatgacacacaagtt |
15261814 |
T |
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| Q |
325 |
tccaatacatc |
335 |
Q |
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| T |
15261813 |
tccaatacatc |
15261803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 15262169 - 15262127
Alignment:
| Q |
1 |
tcatcaacactaaaatataaacacccttctttaaaagttcttg |
43 |
Q |
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| T |
15262169 |
tcatcgacactaaaatataaacacccttctttaaaagttcttg |
15262127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 227 - 302
Target Start/End: Original strand, 37882999 - 37883074
Alignment:
| Q |
227 |
cacacaattgcaatttatacaaggactaaattccaaacctgtcaattacaatttttgtattgaaaaattgtaaacc |
302 |
Q |
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| T |
37882999 |
cacacaattctaatttttataaggacaaaattgcaaacctctcgattacaatttttgcatggaaaaattgcaaacc |
37883074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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