View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5303_high_2 (Length: 511)
Name: NF5303_high_2
Description: NF5303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5303_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-159; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 18 - 321
Target Start/End: Complemental strand, 35900592 - 35900288
Alignment:
| Q |
18 |
aatagaaccagtgaactaacataagcttcaaattagaaatgaaatccatctttagttcaagataaatcaaacaccgaaaacatcatcattttaacataat |
117 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35900592 |
aatacaaccagtgaactaacataagcttcaaattagaaatgaaatccatctttagttcaagataaatcaaacaccgaaaacatcatcattttaacataat |
35900493 |
T |
|
| Q |
118 |
gagcctaaaagatttgtactgctagccaaaagtagagttaattaatgccaaatatgaccagaatctttctcccttggactagatgctttttacattgatt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
35900492 |
gagcctaaaagatttgtactgctagccaaaagtagagttaattaatgccaaatatgaccagaatctttctcccttggactagatgttttttacattgatt |
35900393 |
T |
|
| Q |
218 |
ttaaaaggtgtatatcataattaagaataatataaaaacagagaacaaaaattcatgtacca-acgaccttgtactctggagccaaaacatttttcacaa |
316 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35900392 |
ttaaaaggtgtatatcatagttaagaataatataaaaacagagaacaaaaattcatgtaccagacgaccttgtactctggagccaaaacatttttcacaa |
35900293 |
T |
|
| Q |
317 |
tgaca |
321 |
Q |
| |
|
||||| |
|
|
| T |
35900292 |
tgaca |
35900288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 220 - 399
Target Start/End: Complemental strand, 35882478 - 35882302
Alignment:
| Q |
220 |
aaaaggtgtatatcataattaagaataatataaaaacagagaacaaaaat-tcatgtaccaacgaccttgtactctggagccaaaacatttttcacaatg |
318 |
Q |
| |
|
|||| ||||||||| || ||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
35882478 |
aaaaagtgtatatcctagctaagaataatataaaaacatagaacaaaaacatcatgtacca--gaccttgtactctggagcccaaacatttttcacaatg |
35882381 |
T |
|
| Q |
319 |
acagagtttaaatttgatgacacggtttagtgtgtagagctccccccatatcgctcattaattcatctatcttaacctgca |
399 |
Q |
| |
|
||||||||||||| ||||| ||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
35882380 |
acagagtttaaatctgatg--acggtgtagtgtgtagagctccccccatttcaatcattaattcatctatcttaacctgca |
35882302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 366 - 462
Target Start/End: Complemental strand, 35900287 - 35900191
Alignment:
| Q |
366 |
atatcgctcattaattcatctatcttaacctgcannnnnnntgaaggataaaataccaagagaaataactgaaaacttatgagcgtttcaataaaag |
462 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35900287 |
atatcgctcattaattcatctatcttaacctgcagggggagtgaaggataaaataccaagagaaataactgaaaacttatgagcgtttcaataaaag |
35900191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 25 - 104
Target Start/End: Complemental strand, 35882900 - 35882821
Alignment:
| Q |
25 |
ccagtgaactaacataagcttcaaattagaaatgaaatccatctttagttcaagataaatcaaacaccgaaaacatcatc |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
35882900 |
ccagtgaactaacataagcttcaaattagaaatgaaatccatctttagttcaagataaatcgaacagtgaaaacatcatc |
35882821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 139 - 221
Target Start/End: Complemental strand, 35882717 - 35882635
Alignment:
| Q |
139 |
ctagccaaaagtagagttaattaatgccaaatatgaccagaatctttctcccttggactagatgctttttacattgattttaa |
221 |
Q |
| |
|
|||||||||||||||| ||||||| ||||| || ||||||||||| |||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
35882717 |
ctagccaaaagtagagctaattaacgccaaccataaccagaatcttcctcccttgaactagatgctttttagattgattttaa |
35882635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 455 - 498
Target Start/End: Complemental strand, 35900182 - 35900139
Alignment:
| Q |
455 |
aataaaagcccaagtagtcttggacttgtcaaccatatggagaa |
498 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35900182 |
aataaaagcccaagtagtcttggacttgtcaaccatatggagaa |
35900139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 23 - 117
Target Start/End: Original strand, 10211436 - 10211529
Alignment:
| Q |
23 |
aaccagtgaactaacataagcttcaaattagaaatgaaatccatctttagttcaagataaatcaaacaccg-aaaacatcatcattttaacataat |
117 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| | ||||||||||| ||||||||||| |
|
|
| T |
10211436 |
aaccagtgaaccaacataagcttcaaattagaaatgaaatccacctttggttcaagataaatcaaacactgaaaaacatcatc--tttaacataat |
10211529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 227 - 399
Target Start/End: Original strand, 10211850 - 10212016
Alignment:
| Q |
227 |
gtatatcataattaagaataatataaaaacagagaacaaaaa-ttcatgtaccaacgaccttgtactctggagccaaaacatttttcacaatgacagagt |
325 |
Q |
| |
|
|||| ||||| || |||||||||||||| | |||||||||| |||| |||||| ||||||||||| | ||||||||||||||||||| |||||| ||| |
|
|
| T |
10211850 |
gtatgtcatagttgagaataatataaaagtacagaacaaaaacttcaggtacca--gaccttgtacttttgagccaaaacatttttcacgatgacaaagt |
10211947 |
T |
|
| Q |
326 |
ttaaatttgatgacacggtttagtgtgtagagctccccccatatcgctcattaattcatctatcttaacctgca |
399 |
Q |
| |
|
| |||| ||| | ||||||| ||||||||||||||||| || ||| |||||| |||||||||||||||| |
|
|
| T |
10211948 |
tcaaatctgacg--tcggttta---tgtagagctccccccatttcagtcactaattcttctatcttaacctgca |
10212016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University