View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5303_high_25 (Length: 279)
Name: NF5303_high_25
Description: NF5303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5303_high_25 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 20 - 267
Target Start/End: Complemental strand, 47717338 - 47717091
Alignment:
| Q |
20 |
aaagataaatctcgaaggtatgtgacctttcctaaatttgttagactgtctaagtcgtggtatgaatgcaggataattttgacgacataaaatttacttc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
47717338 |
aaagataaatctcgaaggtatgtgacctttcctaaatttgttagactgtctaagtcgtggtatggatgcaggataattttgacgacataaaatttacttc |
47717239 |
T |
|
| Q |
120 |
ataataataagttgtgatggttaacagagttttgcattcaaatagagaaaacctagaagcagtaattccaaaagagacagatggcaaagaaaaatggaag |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47717238 |
ataataataagttgtgatggttaacagagttttgcattcaaatagagacaacctagaagcagtaattccaaaagagacagatggcaaagaaaaatggaag |
47717139 |
T |
|
| Q |
220 |
ccaatagttataagtattttgattttaaaaattagatattagcatatt |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47717138 |
ccaatagttataagtattttgattttaaaaattagatattagcatatt |
47717091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 20 - 267
Target Start/End: Complemental strand, 47745128 - 47744887
Alignment:
| Q |
20 |
aaagataaatctcgaaggtatgtgacctttcctaaatttgttagactgtctaagtcgtggtatgaatgcaggataattttgacgacataaaatttacttc |
119 |
Q |
| |
|
||||||||||||| |||||| ||||| || ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
47745128 |
aaagataaatctccaaggtacgtgactttgtctaaattcgtta--ctgtctaagtcgtggtatgaatgcaggataattttgacgacataaaatctacttc |
47745031 |
T |
|
| Q |
120 |
ataataataagttgtgatggttaacagagttttgcattcaaatagagaaaacctagaagcagtaattccaaaagagacagatggcaaagaaaaatggaag |
219 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||| |||| ||||||| |||||||||||||||||| |
|
|
| T |
47745030 |
ataataataagttgtgatggttaacaaagttttgcattcaaaaagagaaaacctagatgcagtaattcaaaaatagacagaaggcaaagaaaaatggaag |
47744931 |
T |
|
| Q |
220 |
ccaatagttataagtattttgattttaaaaattagatattagcatatt |
267 |
Q |
| |
|
|| || || ||||||||||||||||||||||||||||||| |
|
|
| T |
47744930 |
cc----tttgtacaatgtttgattttaaaaattagatattagcatatt |
47744887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 96 - 267
Target Start/End: Complemental strand, 47712524 - 47712353
Alignment:
| Q |
96 |
ttttgacgacataaaatttacttcata--ataataagttgtgatggttaacagagttttgcattcaaatagagaaaacctagaagcagtaattccaaaag |
193 |
Q |
| |
|
|||||| |||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||| |||| |
|
|
| T |
47712524 |
ttttgaagacataaaatctacttcatataataataagttgtgatggttaaca---ttttgcattcaaatagagaaaacctagatgcaataattcaaaaat |
47712428 |
T |
|
| Q |
194 |
agacagat-ggcaaagaaaaatggaagccaatagttataagtattttgattttaaaaattagatattagcatatt |
267 |
Q |
| |
|
||| | | || ||||||||||||| ||||||||| |||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
47712427 |
agaaaaaaagggaaagaaaaatggacgccaatagtcataagtttttttattttaaaaattagatattagcatatt |
47712353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 23 - 192
Target Start/End: Complemental strand, 47759451 - 47759276
Alignment:
| Q |
23 |
gataaatctcgaaggtatgtgacctttcctaaatttgttagactgtctaagtcgtggtatgaatgcaggataattttga-------cgacataaaattta |
115 |
Q |
| |
|
|||||||||||||||| |||||| || ||||||| |||||||||||| |||||||||||| |||||||||||||| ||| |||||| || |
|
|
| T |
47759451 |
gataaatctcgaaggtgtgtgactttgtctaaattcagtagactgtctaaatcgtggtatgaactcaggataattttgagttttgacgatttaaaatcta |
47759352 |
T |
|
| Q |
116 |
cttcataataataagttgtgatggttaacagagttttgcattcaaatagagaaaacctagaagcagtaattccaaaa |
192 |
Q |
| |
|
|||||||||| |||||||| |||||||||| ||||||||||||||||| | |||| ||||| | |||||||| |||| |
|
|
| T |
47759351 |
cttcataatattaagttgtaatggttaacaaagttttgcattcaaata-aaaaaaactagatgtagtaattcaaaaa |
47759276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 78 - 256
Target Start/End: Complemental strand, 47714004 - 47713816
Alignment:
| Q |
78 |
ggtatgaatgcagg--ataattttgacgacataaaatttacttcataataataagt--tgtgatggttaacagagttttgcattcaaatagagaaaacct |
173 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||| |||||||||||||||| ||||||| |||||| || |||| |||||||| | ||||||| |
|
|
| T |
47714004 |
ggtatgaatgcaggctatagttttgacgacataaaat---cttcataataataagttgtgtgatgattaacaaagcgttgctttcaaatataaaaaacct |
47713908 |
T |
|
| Q |
174 |
agaagcag---------taattccaaaagagacagatggcaaagaaaaatggaagccaatagttataagtattttgattttaaaaattagat |
256 |
Q |
| |
|
||| |||| |||||| |||| ||| ||| || ||||||||||| |||||| |||| |||||| |||||||| |||||||||||| |
|
|
| T |
47713907 |
agatgcagtaatagtaataattcaaaaatagaaagaagggaaagaaaaatgcaagccattagtcataagtgttttgattataaaaattagat |
47713816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University