View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5303_high_27 (Length: 247)
Name: NF5303_high_27
Description: NF5303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5303_high_27 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 5 - 247
Target Start/End: Original strand, 8284698 - 8284940
Alignment:
| Q |
5 |
aatgctaatgatgggatggcggtgttttctaattcacccgcggtgtccgtgaaccaaaaccaagttgatgcttattttcgcatccctactgaaaccgatt |
104 |
Q |
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| T |
8284698 |
aatgctaatgatgggatggtggtgttttctaattcacccgcagtctcggtgaaccaaaaccaagttgatgcttattttcaaacccctactggaaccgatt |
8284797 |
T |
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| Q |
105 |
tacaactacctacacccccatttttctctttccctgtggagaatcatattaatgaagtagtgcctaatgccatgacaccaccacataggtttaatcactt |
204 |
Q |
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| T |
8284798 |
tacaactacctacacccccatttttctctttccctgtgcagaatcatattaatgaagtagtgcctaatgccatgacaccaccacataggtttaatcactt |
8284897 |
T |
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| Q |
205 |
atctggtttcatgaactatggaagtgaaaatggaaactcctca |
247 |
Q |
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| T |
8284898 |
atctggtttcatgaactatggaagtgaaaatggaaactcctca |
8284940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 213
Target Start/End: Original strand, 34694753 - 34694959
Alignment:
| Q |
10 |
taatgatgggatggcggtgttttctaattcacccgcggtgtccgtgaaccaaaaccaagttgatgcttattttcgcatccctactgaaaccgatttacaa |
109 |
Q |
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| T |
34694753 |
taatgatgggatggtgatggtgcctaattcacccgcaatatctctgaaccaaaatcaagatgatacttatcctcacaccctcactggaaccggtctacaa |
34694852 |
T |
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| Q |
110 |
ctacctacacccccatttttctctttccctgtggagaatcatattaatgaa---gtagtgcctaatgccatgacaccaccacataggtttaatcacttat |
206 |
Q |
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| T |
34694853 |
ctacctacacccccattttcctctttcccggttgagaatcatattaataaaagggtagtgcttaatgacatgataacgccagaggggtttaattacttct |
34694952 |
T |
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| Q |
207 |
ctggttt |
213 |
Q |
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| T |
34694953 |
ctggttt |
34694959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 93 - 181
Target Start/End: Original strand, 34686910 - 34687001
Alignment:
| Q |
93 |
ctgaaaccgatttacaactacctacacccccatttttctctttccctgtggagaatcatattaatgaa---gtagtgcctaatgccatgaca |
181 |
Q |
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| T |
34686910 |
ctgaaaccggtctacaactacctacacccccatttccctctttcccggttgagaatcatattaatgaaagggtagtgcttaatgacatgaca |
34687001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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