View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5303_high_28 (Length: 245)

Name: NF5303_high_28
Description: NF5303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5303_high_28
NF5303_high_28
[»] chr4 (13 HSPs)
chr4 (20-230)||(38090791-38091001)
chr4 (10-94)||(38072875-38072959)
chr4 (24-88)||(36108051-36108115)
chr4 (10-94)||(38086385-38086469)
chr4 (25-88)||(36090220-36090283)
chr4 (24-101)||(34971517-34971594)
chr4 (24-88)||(21482783-21482847)
chr4 (10-94)||(38058547-38058631)
chr4 (10-91)||(38081960-38082041)
chr4 (24-88)||(36100792-36100856)
chr4 (20-76)||(38129578-38129634)
chr4 (10-70)||(38061847-38061907)
chr4 (31-77)||(38125636-38125682)
[»] chr2 (5 HSPs)
chr2 (24-101)||(8338676-8338753)
chr2 (24-84)||(11933842-11933902)
chr2 (24-84)||(11947063-11947123)
chr2 (24-84)||(11917671-11917731)
chr2 (24-74)||(11835000-11835050)
[»] chr6 (1 HSPs)
chr6 (24-88)||(6838812-6838876)


Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 20 - 230
Target Start/End: Original strand, 38090791 - 38091001
Alignment:
Q  20 gggggaagatgttttttgggctattagaggtggtggtggagctagttttggtgttattgtttcttggaagattaagttggtttctgtgccggagattgta 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  38090791 gggggaagatgttttttgggctattagaggtggtggtggagctagttttggtgttattgtttcttggaagattaagttggtttctgtgccggagatcgta 38090890  T
Q  120 actgtttttagagttgaaaaaacattggaacaaggtggtggtgatattgttcatcaatggcaatatgttgctgataagatacatgatgggttgtttatta 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38090891 actgtttttagagttgaaaaaacattggaacaaggtggtggtgatattgttcatcaatggcaatatgttgctgataagatacatgatgggttgtttatta 38090990  T
Q  220 gagttgttgtt 230  Q
    |||||||||||    
T  38090991 gagttgttgtt 38091001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 94
Target Start/End: Original strand, 38072875 - 38072959
Alignment:
Q  10 gagaagcaaagggggaagatgttttttgggctattagaggtggtggtggagctagttttggtgttattgtttcttggaagattaa 94  Q
    ||||||||| ||| |||||| | ||||||||||||||||||||||| ||||| ||||||||||| || ||||| |||||||||||    
T  38072875 gagaagcaatgggtgaagatttgttttgggctattagaggtggtggaggagcaagttttggtgtcatagtttcatggaagattaa 38072959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 36108051 - 36108115
Alignment:
Q  24 gaagatgttttttgggctattagaggtggtggtggagctagttttggtgttattgtttcttggaa 88  Q
    |||||| ||||||||||||| |||||||||||||| |||||||||||||||||| |||| |||||    
T  36108051 gaagatcttttttgggctataagaggtggtggtggtgctagttttggtgttattctttcatggaa 36108115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 10 - 94
Target Start/End: Original strand, 38086385 - 38086469
Alignment:
Q  10 gagaagcaaagggggaagatgttttttgggctattagaggtggtggtggagctagttttggtgttattgtttcttggaagattaa 94  Q
    ||||||||| ||| || ||| | ||||||||||||||||||||||| ||||| ||||||||||| || ||||| |||||||||||    
T  38086385 gagaagcaatgggtgaggatttcttttgggctattagaggtggtggaggagcaagttttggtgtcatagtttcatggaagattaa 38086469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 36090283 - 36090220
Alignment:
Q  25 aagatgttttttgggctattagaggtggtggtggagctagttttggtgttattgtttcttggaa 88  Q
    ||||| ||||||||||||| |||||||||||||| |||||||||||||||||| |||| |||||    
T  36090283 aagatcttttttgggctataagaggtggtggtggggctagttttggtgttattctttcatggaa 36090220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 101
Target Start/End: Complemental strand, 34971594 - 34971517
Alignment:
Q  24 gaagatgttttttgggctattagaggtggtggtggagctagttttggtgttattgtttcttggaagattaagttggtt 101  Q
    |||||| | ||||||||||| |||||||||||||| |||||||||||||||||| |||| |||||  |||| ||||||    
T  34971594 gaagatctcttttgggctatcagaggtggtggtggtgctagttttggtgttattctttcatggaaacttaaattggtt 34971517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 21482783 - 21482847
Alignment:
Q  24 gaagatgttttttgggctattagaggtggtggtggagctagttttggtgttattgtttcttggaa 88  Q
    |||||| ||||||||||||| |||||||||||||| ||||||| |||||||||| | ||||||||    
T  21482783 gaagatcttttttgggctataagaggtggtggtggtgctagttatggtgttattttgtcttggaa 21482847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 94
Target Start/End: Original strand, 38058547 - 38058631
Alignment:
Q  10 gagaagcaaagggggaagatgttttttgggctattagaggtggtggtggagctagttttggtgttattgtttcttggaagattaa 94  Q
    ||||||||| ||| |||||| | ||||||||||||||||||||||| ||||| |||||||| || ||  |||| |||||||||||    
T  38058547 gagaagcaatgggtgaagatttgttttgggctattagaggtggtggaggagcaagttttggagtcataatttcatggaagattaa 38058631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 91
Target Start/End: Original strand, 38081960 - 38082041
Alignment:
Q  10 gagaagcaaagggggaagatgttttttgggctattagaggtggtggtggagctagttttggtgttattgtttcttggaagat 91  Q
    ||||||||| ||| ||||||  |||||||||||||||||||||||| ||||| |||||||| || ||  |||| ||||||||    
T  38081960 gagaagcaatgggtgaagattatttttgggctattagaggtggtggaggagcaagttttggagtcataatttcatggaagat 38082041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 36100792 - 36100856
Alignment:
Q  24 gaagatgttttttgggctattagaggtggtggtggagctagttttggtgttattgtttcttggaa 88  Q
    |||||| | ||||||||||| || ||||||||||| |||||||||||||||||| |||| |||||    
T  36100792 gaagatctattttgggctataaggggtggtggtggtgctagttttggtgttattctttcatggaa 36100856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 38129578 - 38129634
Alignment:
Q  20 gggggaagatgttttttgggctattagaggtggtggtggagctagttttggtgttat 76  Q
    |||||||||| ||||||||||||||||||| ||||| ||||| |||||||| |||||    
T  38129578 gggggaagatcttttttgggctattagaggaggtggaggagcaagttttggagttat 38129634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 38061907 - 38061847
Alignment:
Q  10 gagaagcaaagggggaagatgttttttgggctattagaggtggtggtggagctagttttgg 70  Q
    ||||||||| ||| || ||| ||||||||||||||||||| ||||| ||||| ||||||||    
T  38061907 gagaagcaatgggtgaggattttttttgggctattagaggaggtggaggagcaagttttgg 38061847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 38125636 - 38125682
Alignment:
Q  31 ttttttgggctattagaggtggtggtggagctagttttggtgttatt 77  Q
    ||||||||||||||||||| ||||| ||||| |||||||| ||||||    
T  38125636 ttttttgggctattagaggaggtggaggagcaagttttggagttatt 38125682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 101
Target Start/End: Original strand, 8338676 - 8338753
Alignment:
Q  24 gaagatgttttttgggctattagaggtggtggtggagctagttttggtgttattgtttcttggaagattaagttggtt 101  Q
    |||||| | |||||||||||||| ||||||||||| |||||||||||||||||| |||| |||||  |||| ||||||    
T  8338676 gaagatctgttttgggctattaggggtggtggtggtgctagttttggtgttattctttcatggaaacttaaattggtt 8338753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 11933842 - 11933902
Alignment:
Q  24 gaagatgttttttgggctattagaggtggtggtggagctagttttggtgttattgtttctt 84  Q
    |||||| ||||||||||||||| |||||||||||||||||| ||||||||| || ||||||    
T  11933842 gaagatcttttttgggctattaaaggtggtggtggagctagctttggtgttgttctttctt 11933902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 11947063 - 11947123
Alignment:
Q  24 gaagatgttttttgggctattagaggtggtggtggagctagttttggtgttattgtttctt 84  Q
    |||||| ||||||||||||||| |||||||||||||||||| ||||||||| || ||||||    
T  11947063 gaagatcttttttgggctattaaaggtggtggtggagctagctttggtgttgttctttctt 11947123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 11917671 - 11917731
Alignment:
Q  24 gaagatgttttttgggctattagaggtggtggtggagctagttttggtgttattgtttctt 84  Q
    |||||| ||||||||||||| |||||||||||||||||||  ||||||||| || ||||||    
T  11917671 gaagatcttttttgggctataagaggtggtggtggagctaactttggtgttgttctttctt 11917731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 74
Target Start/End: Complemental strand, 11835050 - 11835000
Alignment:
Q  24 gaagatgttttttgggctattagaggtggtggtggagctagttttggtgtt 74  Q
    |||||| |||||||||||||  |||| |||||||| |||||||||||||||    
T  11835050 gaagatcttttttgggctatacgaggcggtggtggtgctagttttggtgtt 11835000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 6838812 - 6838876
Alignment:
Q  24 gaagatgttttttgggctattagaggtggtggtggagctagttttggtgttattgtttcttggaa 88  Q
    |||||| |||||||||| || |||||||||||||| |||||||||||||||||| |||| |||||    
T  6838812 gaagatcttttttgggccataagaggtggtggtggtgctagttttggtgttattctttcatggaa 6838876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University