View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5303_high_4 (Length: 475)
Name: NF5303_high_4
Description: NF5303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5303_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 222 - 462
Target Start/End: Complemental strand, 55060688 - 55060447
Alignment:
| Q |
222 |
ggaaatctgtttatgaatcaagaacatggtttggtgaaatattggctactaa-gagttctgttgattgtgatgttgttatagttgttcctgattgtggtg |
320 |
Q |
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| T |
55060688 |
ggaaatctgtttatgaatcaagaagatggtttggtgaaatattggctactaaagagtcctgttgattgtgatgttgttatagttgttcctgattttggtg |
55060589 |
T |
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| Q |
321 |
ttgttgctgcacttggttatgctgcaaaagttggtgttccttttcaacagggtttgattaggtcacactatgttggtagaactttcattgagccatcaca |
420 |
Q |
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| T |
55060588 |
ttgttgctgcacttggttatgctgcaaaagctggtgttccttttcaacagggtttgattaggccacactatgttggtagaactttcattgagccatcaca |
55060489 |
T |
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| Q |
421 |
gaagattagagattttggtgtgaagttgaagctttcgccggt |
462 |
Q |
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| T |
55060488 |
gaagattagagattttggtgtgaagttgaagctttcgccggt |
55060447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 15 - 171
Target Start/End: Complemental strand, 55060897 - 55060741
Alignment:
| Q |
15 |
aagaagaagtaatagttctgttgtttttgcttcggaaacatgtgcacttgatttgattgaagctacttatgaaagagaggtttgtcctggtgagattgtg |
114 |
Q |
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| T |
55060897 |
aagaagaagtaatagttctgttgtttttgcttcggaaacatgtgcacttgatttgattgaagctacttatgaaagagaggtttatcctggtgagattgtg |
55060798 |
T |
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| Q |
115 |
gttgtggataaaagtggtgttcaatctcattgtcttgtttctcgtccagaaccaaaa |
171 |
Q |
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| T |
55060797 |
gttgtggataaaagtggtgttcaatctcattgtcttgtttctcgtccagaaccaaaa |
55060741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 266 - 459
Target Start/End: Complemental strand, 27356828 - 27356635
Alignment:
| Q |
266 |
gctactaagagttctgttgattgtgatgttgttatagttgttcctgattgtggtgttgttgctgcacttggttatgctgcaaaagttggtgttccttttc |
365 |
Q |
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| T |
27356828 |
gctactgagagtcctgttgattgtgatgttgtgatagctgttcctgattctggtgttgtggctgctcttggttatgctgcgaaagctggtgttccttttc |
27356729 |
T |
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| Q |
366 |
aacagggtttgattaggtcacactatgttggtagaactttcattgagccatcacagaagattagagattttggtgtgaagttgaagctttcgcc |
459 |
Q |
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| T |
27356728 |
agcaagggttgattaggtcacactatgtaggaaggactttcattgagccatctcagaaaattagggattttggtgtgaagttgaagctttcgcc |
27356635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 27357077 - 27356988
Alignment:
| Q |
19 |
agaagtaatagttctgttgtttttgcttcggaaacatgtgcacttgatttgattgaagctacttatgaaagagaggtttgtcctggtgag |
108 |
Q |
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| T |
27357077 |
agaagtaatggtgctgttgtttttgcttctgagacttgtgctcttgatttgattgaagctacttatgagagggaagttttccctggtgag |
27356988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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