View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5303_high_5 (Length: 453)
Name: NF5303_high_5
Description: NF5303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5303_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 19 - 383
Target Start/End: Original strand, 48894247 - 48894611
Alignment:
| Q |
19 |
gattctccaaggttgagactttcattaccaaccaaatgagcattgttcaacttcatagctgccaatgttttctgatcaatcccattagcaacttccttca |
118 |
Q |
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| T |
48894247 |
gattctccaaggttgagactttcattaccaaccaaatgagcattgttcaacttcatagctgccaatgttttctgatcaatcccattagcaccttccttca |
48894346 |
T |
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| Q |
119 |
ttaccatgttctgatttggatttcctttcttgccactatttccattgccggcattgttcatcttagctataatacctttcttcacattgtttgcatcatt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48894347 |
ttaccatgttctgatttggatttcctttcttgccactatttccattgccagcattgttcatcttagctataatacctttcttcacattgtttgcatcatt |
48894446 |
T |
|
| Q |
219 |
cgcttgctttagcatctgaagatgattggttctctccctgatgaaccgcatctcttcatcctcctcctcttcgtcctcgtcatattcgtagtattcatca |
318 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48894447 |
cgcttgctttagcatctgaagatgattagttctctccctgatgaaccgcatctcttcatcctcctcctcttcgtcctcgtcatattcgtagtattcatca |
48894546 |
T |
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| Q |
319 |
tcctcttcagaactaaaagcaggaaatttctgctgatttttgaagacttcaagccctttgaccag |
383 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48894547 |
tcctcttcagaactaaaagcaggaaatttctgctgatttttgaagacttcaagccctttgaccag |
48894611 |
T |
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