View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5303_high_6 (Length: 433)
Name: NF5303_high_6
Description: NF5303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5303_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 58 - 417
Target Start/End: Original strand, 43919368 - 43919726
Alignment:
| Q |
58 |
acaaatggaaacgttgtagttatttagaggtcaatgtattattacaaggtagtcatgggcacttttctgtgacttgttgatgattacatgggaaatatca |
157 |
Q |
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| T |
43919368 |
acaaagggaaacgttgtagttatttagaggtcaatgtattattacaaggtagtcatgggcacttttctgtggcttgatgatgattacatgggaaatatca |
43919467 |
T |
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| Q |
158 |
cgttgagcaacnnnnnnnctttctcccaccacctggtatttcatttcttaaagttattcctggaggctttgatggaaaagctcttgctagtctccttcct |
257 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43919468 |
cgttgagcaacaaaaaaactttctcccaccacctggtatttcatttcttaaagttattcctggaggctttgatggaaaagctcttgctagtctccttcct |
43919567 |
T |
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| Q |
258 |
gcggttaacagttagaaacaaccacttaatacagatgctttattttcttacactaacttgtaacttctagggtcaaatagcaaaacactattgaaatcag |
357 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43919568 |
gcggttaacagatagaaacaaccacttaatacagatgctttattttcttacactaacttgtaacttctagggtcaaatagcaaaacactattgaaatcag |
43919667 |
T |
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| Q |
358 |
gttcataaattttcatatagtttttactccatagtcccattcagcacctaagccacatac |
417 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
43919668 |
gttcataaattttcatatagtttttactccatagt-ccattcagcacctaagccacatac |
43919726 |
T |
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