View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5303_high_8 (Length: 410)
Name: NF5303_high_8
Description: NF5303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5303_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 2 - 399
Target Start/End: Complemental strand, 13766822 - 13766425
Alignment:
| Q |
2 |
ccattgtctgaattttggatgcttcatcaaagtgattcgtggtttgaaaactcagtatctgacttaagaaacaactatcatcgaagtgattattattgct |
101 |
Q |
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| T |
13766822 |
ccattgtctgaattttggatgcttcatcaaagtgattcgtggtttgaaaactcagtatctgacttaagaaacaactatcattgaagtgattattattgct |
13766723 |
T |
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| Q |
102 |
atatttgtggctttcaatggtctttccctaaaccattaataattaacattcatataatttttccatgttaatatactctatttttgttattataggattg |
201 |
Q |
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| T |
13766722 |
atatttgtggctttcaatggtttttccctaaaccattaataattaacattcatataatttttccatgttaatatactctatttttgttatcataggattg |
13766623 |
T |
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| Q |
202 |
ttcttattttaccttttctttatttgatgatttagagttaatattatttgttgagtacgtatcacattaaacttgaggcaatggtgcatatttctatttt |
301 |
Q |
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| T |
13766622 |
ttcttattttaccttttctttatttgatgatttagagttaatattatttgttaagtacgtatcacattaaacttgaggcaatggtgcatatttctatttt |
13766523 |
T |
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| Q |
302 |
aatagttttcttgtaaacatgaggacttctaaccaaataagcaaattaatgtttgggtaccttagattttcttgtttaaccttcacacgtgtgttcat |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13766522 |
aatagttttcttgtaaacatgaggacttctaaccaaataagcaaattaatgtgtgggtaccttagattttcttgtttaaccttcacacgtgtgttcat |
13766425 |
T |
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