View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5303_low_10 (Length: 404)
Name: NF5303_low_10
Description: NF5303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5303_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 203 - 386
Target Start/End: Complemental strand, 32010092 - 32009909
Alignment:
| Q |
203 |
ttcggtacgtgattgcatcactctcacattataaatatgtaaatgaggtaggtatgtatggagataactctttacccaatttatacacctaaagtatact |
302 |
Q |
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| T |
32010092 |
ttcggtacgtgattgcatcactctcacattataaatatgtaaatgaggtaggtatgtatggagataactctttacccaatttatacacctaaagtatact |
32009993 |
T |
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| Q |
303 |
tgaagtgcagtaccgcccaacatttgatacaatatatgttgcaactgcctaaaaccatttacttcatttaaaaatatgtactat |
386 |
Q |
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| T |
32009992 |
tgaagtgcagtaccgcccaacatttgatacaatatatgttgcaactgcctaaaaccatttacttcatttaaaaatatgtactat |
32009909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 5 - 133
Target Start/End: Complemental strand, 32010256 - 32010128
Alignment:
| Q |
5 |
taaattatacttttattatctgatgaactaaaatttaaattctgataaagagatgtgttctatttagtgtttgatataacttataagtgaaaaattggat |
104 |
Q |
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| T |
32010256 |
taaattatacttttattatctgatgaactaaaatttaaattctgataaagagatgtgttctatttagtgtttgatataacttataagtgaaaaattggat |
32010157 |
T |
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| Q |
105 |
taaatcaatattttaaaactctagtgatg |
133 |
Q |
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| T |
32010156 |
taaatcaatattttaaaactctagtgatg |
32010128 |
T |
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