View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5303_low_12 (Length: 397)
Name: NF5303_low_12
Description: NF5303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5303_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 9 - 379
Target Start/End: Original strand, 5113446 - 5113813
Alignment:
| Q |
9 |
aaagaaaggaatctaggctgatgaatttgagaagctgtacaagaaggttaatgatgccattcatgtagatccttctataaagaaatcagagaagcatcct |
108 |
Q |
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| T |
5113446 |
aaagaaaggaatcgaggctgatgaatttgagaagctgtataagaaggttaatgatgccattcgtgtagatccttctataaagaaatcacagaagcatcct |
5113545 |
T |
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| Q |
109 |
cctaaacaacacaagatgtataatctgaagaagcttacctatgaggagcggaaagctaagttgattgaatgttgcaagctcttaacactgctgttgatga |
208 |
Q |
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| T |
5113546 |
cctaaacaacacaagatgtataatctgaagaagcttacctatgaggagcggaaagctaagttgattgaatgttgcaagctcttaacactgctgttgatga |
5113645 |
T |
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| Q |
209 |
cgatgaggatgacgacgagctagaacagtcttgtttgtgtctaggctacttttgaagaagtttgtcatccaatggacaactctttggaatgcttataaga |
308 |
Q |
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| T |
5113646 |
cgatgaggatgacgacgagctagaagagtcttgtttgtgtctaggctacttttgaagaagtttgtcatccaatggacaactctttggaatgcttat---a |
5113742 |
T |
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| Q |
309 |
agaacatgtgaaattttttgaatgaaaaagaagcacaagttctgaaacaaagaattattgaacatgtgatt |
379 |
Q |
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| T |
5113743 |
agaacatgtgaaattttttgaatgaaaaagaagcacaagttctgaaacaaagaattattgaacatgcgatt |
5113813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 126 - 171
Target Start/End: Complemental strand, 10463713 - 10463668
Alignment:
| Q |
126 |
gtataatctgaagaagcttacctatgaggagcggaaagctaagttg |
171 |
Q |
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| T |
10463713 |
gtataatctgaagaagcttacctatgaggagcggaaagctaagttg |
10463668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 10 - 129
Target Start/End: Complemental strand, 10463929 - 10463810
Alignment:
| Q |
10 |
aagaaaggaatctaggctgatgaatttgagaagctgtacaagaaggttaatgatgccattcatgtagatccttctataaagaaatcagagaagcatcctc |
109 |
Q |
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|||||||||||| |||| |||| ||||| |||| |||||||||||| ||| ||| |||| || ||||||| | || |||||||| |||||||| |||| |
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| T |
10463929 |
aagaaaggaatcgaggcagatggccttgaggagctttacaagaaggttcatgctgcaattcgtgcagatcctacaatcaagaaatccgagaagcagcctc |
10463830 |
T |
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| Q |
110 |
ctaaacaacacaagatgtat |
129 |
Q |
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| T |
10463829 |
caaaacaacacaagaggtat |
10463810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 318 - 379
Target Start/End: Original strand, 38650711 - 38650772
Alignment:
| Q |
318 |
gaaattttttgaatgaaaaagaagcacaagttctgaaacaaagaattattgaacatgtgatt |
379 |
Q |
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|||| ||||||| |||||||| ||| ||| ||||||||||||||||||||||||||||||| |
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| T |
38650711 |
gaaagtttttgagtgaaaaagcagctgaagatctgaaacaaagaattattgaacatgtgatt |
38650772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 318 - 379
Target Start/End: Original strand, 38625665 - 38625726
Alignment:
| Q |
318 |
gaaattttttgaatgaaaaagaagcacaagttctgaaacaaagaattattgaacatgtgatt |
379 |
Q |
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|||| ||||||| |||||||| ||| ||| ||||||||| ||||||||||||||||||||| |
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| T |
38625665 |
gaaagtttttgagtgaaaaagcagctgaagatctgaaacagagaattattgaacatgtgatt |
38625726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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