View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5303_low_20 (Length: 327)
Name: NF5303_low_20
Description: NF5303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5303_low_20 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 11 - 327
Target Start/End: Original strand, 48068565 - 48068881
Alignment:
| Q |
11 |
gagaagcataggttaccagaaaaaatatatatcatttctttctccagttggactttttgtgataaactatctaatggttgtgttctgttgctgacaacaa |
110 |
Q |
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| T |
48068565 |
gagaaacataggttaccagaaaaaatatatatcatttctttctccagttggactttttgtgataaactatctaatggttgtgttctgttgctgacaacaa |
48068664 |
T |
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| Q |
111 |
taaatgtatttccatcatttgatgttcgttccttgattgttccatgctcaaacactgtccaatccttaatgttgtgatcaaatcctggatttactataat |
210 |
Q |
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| T |
48068665 |
taaatgtatttccatcatttgatgttcgttccttgattgttccatgctcaaacaccgtccaatccttaatgttgtgatcaaatcctggatttactataat |
48068764 |
T |
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| Q |
211 |
gccacctccatattgtgctctctgaggttctgggacacactgctttatttcaagacaagtttgtgacttaaaacacgttgatgtgaaatcatccaattgg |
310 |
Q |
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| T |
48068765 |
gccacctccatattgtgctctctgaggttctgggacacactggtttatttcaagacaagtttgtgacttaaaacacattgatgtgaaatcatccaattgg |
48068864 |
T |
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| Q |
311 |
attaataatatactagt |
327 |
Q |
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| T |
48068865 |
attaataatatactagt |
48068881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 22 - 264
Target Start/End: Original strand, 48063920 - 48064162
Alignment:
| Q |
22 |
gttaccagaaaaaatatatatcatttctttctccagttggactttttgtgataaactatctaatggttgtgttctgttgctgacaacaataaatgtattt |
121 |
Q |
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| T |
48063920 |
gttaccagaaaacatgtatatcattcctttcttcagttggaccttctgtgagaaaccatccaatgtttgtcttctgttgctagcaacaatgaatctattt |
48064019 |
T |
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| Q |
122 |
ccatcatttgatgttcgttccttgattgttccatgctcaaacactgtccaatccttaatgttgtgatcaaatcctggatttactataatgccacctccat |
221 |
Q |
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| T |
48064020 |
tcatcatttgatattcgttcctcgattgttccatttccaaacactctccaaccctttatgttgtgatcaaatcctggatttactataatgcctcctccat |
48064119 |
T |
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| Q |
222 |
attgtgctctctgaggttctgggacacactgctttatttcaag |
264 |
Q |
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| T |
48064120 |
attgtgccctcttaggttctgtcacacactgctttatttcaag |
48064162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 11 - 256
Target Start/End: Original strand, 48101162 - 48101407
Alignment:
| Q |
11 |
gagaagcataggttaccagaaaaaatatatatcatttctttctccagttggactttttgtgataaactatctaatggttgtgttctgttgctgacaacaa |
110 |
Q |
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| T |
48101162 |
gagaaacataggttaccagaaaaagtatatatcattcctttcttcagttggaccttctgtgaaaaactatccaatggttgtgttctgttgctggcaacaa |
48101261 |
T |
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| Q |
111 |
taaatgtatttccatcatttgatgttcgttccttgattgttccatgctcaaacactgtccaatccttaatgttgtgatcaaatcctggatttactataat |
210 |
Q |
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| T |
48101262 |
tgaatctatttccgttgtttgatactcgttcctcgattgttccatttccaaacactttccagccatttatgttgtgatcaaatcctggatttactgtaat |
48101361 |
T |
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| Q |
211 |
gccacctccatattgtgctctctgaggttctgggacacactgcttt |
256 |
Q |
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| T |
48101362 |
gcctcccccatattgtgccctcttaggttctgtcacacactgcttt |
48101407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 22 - 241
Target Start/End: Original strand, 48107589 - 48107808
Alignment:
| Q |
22 |
gttaccagaaaaaatatatatcatttctttctccagttggactttttgtgataaactatctaatggttgtgttctgttgctgacaacaataaatgtattt |
121 |
Q |
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| T |
48107589 |
gttacctgaaaaagtatatatcaatcctttctctagctgaaccgtttgtgaaaaactatctaatgattgtgttcttttgctggcaacaatgaatctattt |
48107688 |
T |
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| Q |
122 |
ccatcatttgatgttcgttccttgattgttccatgctcaaacactgtccaatccttaatgttgtgatcaaatcctggatttactataatgccacctccat |
221 |
Q |
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| T |
48107689 |
ccatcatttgatatacgttcctcaattgttccatttccaaatactgtccaaccctctatgttgtgatcaaatccggaatttactataattccccctccat |
48107788 |
T |
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| Q |
222 |
attgtgctctctgaggttct |
241 |
Q |
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| T |
48107789 |
attgtgctctttgaggttct |
48107808 |
T |
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