View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5303_low_25 (Length: 307)
Name: NF5303_low_25
Description: NF5303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5303_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 299
Target Start/End: Original strand, 46463271 - 46463550
Alignment:
| Q |
19 |
ttcaaaactattagggagatttgagtgtatatttgggcatcacaagaatattattactgaagtcatgcgcggagaatcgatctaatccaaaaatatttct |
118 |
Q |
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| T |
46463271 |
ttcaaaactattagggagatttgagtgtatatttgggcatcacaagaatattattactgaagtcatgcgcggagaatcgatctaatccaaaaatatttct |
46463370 |
T |
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| Q |
119 |
acaatggtattcaacaatgatatttgagtcactctttctagnnnnnnnnnnnnnaaatggaaaatgttagtaattagttgttaatttaatatttatcgct |
218 |
Q |
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| T |
46463371 |
acaatggtattcaacaatgatatttgagtcactctttctag-ttttttttttttaaatggaaaatgttaggaattagttgttaatttaatatttatcgct |
46463469 |
T |
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| Q |
219 |
catttgggtttgaatcccggactccaactccttattctttaattaaaattagttgagctgctcaaccgttattcctttgct |
299 |
Q |
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| T |
46463470 |
catttgggtttgaatcccggactccaactccttattctttaattaaaattagttgaactgctcaaccgttattcttttgct |
46463550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 213
Target Start/End: Complemental strand, 10799311 - 10799271
Alignment:
| Q |
173 |
aaatggaaaatgttagtaattagttgttaatttaatattta |
213 |
Q |
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|||| |||||||||||||||||||||||| |||||||||| |
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| T |
10799311 |
aaatcgaaaatgttagtaattagttgttagattaatattta |
10799271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 49416346 - 49416314
Alignment:
| Q |
180 |
aaatgttagtaattagttgttaatttaatattt |
212 |
Q |
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| T |
49416346 |
aaatgttagtaattagttgttaaattaatattt |
49416314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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