View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5303_low_26 (Length: 301)
Name: NF5303_low_26
Description: NF5303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5303_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 13 - 283
Target Start/End: Original strand, 48068906 - 48069174
Alignment:
| Q |
13 |
ttgctacttcgcaatttttgattcaaaactaggagtgcgggacaaaaatggattttatgaaggaaaaaattgtgagtgagtaaaaatatgagaccaaaac |
112 |
Q |
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| T |
48068906 |
ttgctaattcgcaatttttgattcaaaactatgagtgcgggacaaaaatggattttatgaaggagaaaattgtgagtgagtaaaaatatga--ccaaaac |
48069003 |
T |
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| Q |
113 |
tacaattgagtctcatcgtaannnnnnngacgagacacttttagtaaatgaaaggactaaaaagaatagaaaaatgataaaagacacgacaaatattttc |
212 |
Q |
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| T |
48069004 |
tacaattgagtctcatcgtaatttttttgacgagacacttttagtaaataaaatgactaaaaagaatagaaaaatgctaaaagacacgataaatattttc |
48069103 |
T |
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| Q |
213 |
gtgctacacacacgaatgtggtaacaacctccatatacaagggtttctctcgatttctacgttgggttttc |
283 |
Q |
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| T |
48069104 |
gtgctacacacacgaatgtggtaacaacctccatatacaagggtttctctctatttctatattgggttttc |
48069174 |
T |
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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 235
Target Start/End: Original strand, 10396383 - 10396438
Alignment:
| Q |
180 |
agaaaaatgataaaagacacgacaaatattttcgtgctacacacacgaatgtggta |
235 |
Q |
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| T |
10396383 |
agaaaaatggtaaatgacacaacaaatattttcgtgctaaagacacgaatgtggta |
10396438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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