View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5303_low_27 (Length: 301)
Name: NF5303_low_27
Description: NF5303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5303_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 91 - 186
Target Start/End: Complemental strand, 18201615 - 18201526
Alignment:
| Q |
91 |
ttttcagaatgtcagaaaccccacaagagtggcaggtctggctgcactgcacctgcacaggcacaggcacagcactgcttctctcattttccaaat |
186 |
Q |
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| T |
18201615 |
ttttcagaatgtcagaaaccccacaagagtggcaggtctggctgcactgcacctgcacaggc------acagcactgcttctctcattttccaaat |
18201526 |
T |
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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 252 - 283
Target Start/End: Complemental strand, 18201461 - 18201430
Alignment:
| Q |
252 |
agttcagtatgaacagtaataaaagcttcaac |
283 |
Q |
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| T |
18201461 |
agttcagtatgaacagtaataaaagcttcaac |
18201430 |
T |
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