View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5303_low_28 (Length: 297)
Name: NF5303_low_28
Description: NF5303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5303_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 18 - 181
Target Start/End: Complemental strand, 2627721 - 2627558
Alignment:
| Q |
18 |
gagattggaatcgaaaacctccttgttcctcattcacacgaatctgtaacacataatcgaactcaaaattgaaatcgaattgaaatcagtttgtttcagt |
117 |
Q |
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| T |
2627721 |
gagattggaatcgaaaacctccttgttcctcattcacacgaatctgtaacacataatcgaactcaaaattaaaatcaaattgaaatcagtttgtttcagt |
2627622 |
T |
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| Q |
118 |
tttgattttttgagtgaagatgcagtttgacgaattgtgcaaataaaccaacctttagatttag |
181 |
Q |
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| T |
2627621 |
tttgattttttgaatgaagatgcggtttgacgaattgtgcaaataaaccaacctttagatttag |
2627558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 194 - 285
Target Start/End: Original strand, 22674411 - 22674502
Alignment:
| Q |
194 |
agaagatttgatgagttcatagttgaatattgtataatcatatcatttaactatacacgcaaagttatgacaaatcaaagatttgtgatgat |
285 |
Q |
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| T |
22674411 |
agaagatttgatgagttcatagttgaatattgtataatcatatcatttaactatacacacaaagttatgacaaatcaaagatttgtgatgat |
22674502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 55190288 - 55190216
Alignment:
| Q |
18 |
gagattggaatcgaaaacctccttgttcctcattcacacgaatctgtaacacataatcgaactcaaaattgaaa |
91 |
Q |
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|||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
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| T |
55190288 |
gagattggaatcgaaatc-tccttgttcctcattcacacgaatctgtaacccataatcgaaatcaaaattgaaa |
55190216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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