View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5303_low_29 (Length: 289)
Name: NF5303_low_29
Description: NF5303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5303_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 8284990 - 8285262
Alignment:
| Q |
1 |
atgagatcaccatgaactatggaagtaaaagtggaattgcctcaatgaatcaccgatatgatcaagagaagattcaagaggaagcaatgaatatgattca |
100 |
Q |
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| T |
8284990 |
atgagatcaccatgaactatggaagtaaaagtggaattgcctcaatgaatcaccgatatgatcaagagaagattcaagaggaagcaatgaatatgattca |
8285089 |
T |
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| Q |
101 |
catgtaccagcaagacccacaacttaattttggtgttgctacaacatcaagcaatgatgatgagtcagttgatcttgctcctcttcctcctactaccatt |
200 |
Q |
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| T |
8285090 |
catgtaccagcaagacccacaacttaattttggtgttgctacaacatcaagcaatgatgatgagtcagttgatcttgctcctcttcctcctactaccatt |
8285189 |
T |
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| Q |
201 |
ggtgcacctgatgctgttccattccccattattgatcatcgacatcaaggtaatcatcatcaagcgttacaaa |
273 |
Q |
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| T |
8285190 |
ggtgcacctgatgctgttccattccccattattgatcatcgacatcaaggtaatcaatatcaagttttacaaa |
8285262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 61 - 190
Target Start/End: Original strand, 34687150 - 34687276
Alignment:
| Q |
61 |
atcaagagaagattcaagaggaagcaatgaatatgattcacatgtaccagcaagacccacaacttaattttggtgttgctacaacatcaagcaatgatga |
160 |
Q |
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|||||||||| |||||||||||||| ||||||||||| |||||| |||| |||||||||||| ||||||||||||| | ||||| ||||| |||||||| |
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| T |
34687150 |
atcaagagaatattcaagaggaagcgatgaatatgatgcacatgcaccaacaagacccacaatttaattttggtgtcacgacaacttcaagtaatgatga |
34687249 |
T |
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| Q |
161 |
tgagtcagttgatcttgctcctcttcctcc |
190 |
Q |
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| T |
34687250 |
t---tcaactgatcttgctcctctacctcc |
34687276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 190
Target Start/End: Original strand, 34695026 - 34695205
Alignment:
| Q |
11 |
catgaactatggaagtaaaagtggaattgcctcaatgaatcaccgatatgatcaagagaagattcaagaggaagcaatgaatatgattcacatgtaccag |
110 |
Q |
| |
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|||||||||||||| |||| |||||| |||||| ||| ||| | |||||||||||| ||||||||||| | || ||||||| || ||| | || |
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| T |
34695026 |
catgaactatggaaacaaaaatggaatctgctcaatcaatgacctttttgatcaagagaatattcaagaggagtcgattcatatgatgcatatgcatcaa |
34695125 |
T |
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| Q |
111 |
caagacccacaacttaattttggtgttgctacaacatcaagcaatgatgatgagtcagttgatcttgctcctcttcctcc |
190 |
Q |
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|||||||||||||||||||||||||| | ||| | ||||| ||||||||| | ||| ||||||||||||||| ||||| |
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| T |
34695126 |
caagacccacaacttaattttggtgtcacgacagcttcaagtaatgatgatcattcaactgatcttgctcctctccctcc |
34695205 |
T |
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