View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5304-Insertion-3 (Length: 251)
Name: NF5304-Insertion-3
Description: NF5304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5304-Insertion-3 |
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| [»] chr7 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr6 (7 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 8 - 251
Target Start/End: Complemental strand, 26490853 - 26490610
Alignment:
| Q |
8 |
ctaattaagcaccaagacagaagcgagggttccaacaccactcgtaaaataaacaagttgcaatatgcaatctagccaagctccattgccatgacagcac |
107 |
Q |
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| T |
26490853 |
ctaattaagcactaagacagaagcgagggttccaacaccgctcgtaaaataaacaagttgcaatatgcaatctagccaagctccattgccatgacagcac |
26490754 |
T |
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| Q |
108 |
tttgatttggtccaccatatcctccacctcaaaagccttattgttaaaaatacaactattacgagacctccaaaccacccaaatcaccgcatgccaaatc |
207 |
Q |
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| T |
26490753 |
tttgatttggtccaccatatcctccacctcaaaagccttattgttaaaaatacaactattacgacacctccaaaccacccaaatcaccgcatgccaaatc |
26490654 |
T |
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| Q |
208 |
aaccataccccttttttaagcttctcagctcttacttctctaga |
251 |
Q |
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| T |
26490653 |
aaccatgccccttttttaagcttctcagctcttacttctctaga |
26490610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 32 - 251
Target Start/End: Complemental strand, 13855716 - 13855506
Alignment:
| Q |
32 |
gagggttccaacaccactcgtaaaataaacaagttgcaatatgcaatctagccaagctccattgccatgacagcactttgatttggtccaccatatcctc |
131 |
Q |
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|||| |||||||||||||| || |||||||| || ||||| | |||||||||||| |||||||| || |||| |||||||||||| |||||||| ||||| |
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| T |
13855716 |
gaggattccaacaccactcatagaataaacacgtcgcaatgttcaatctagccaaactccattgtcacgacaacactttgatttgatccaccatttcctc |
13855617 |
T |
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| Q |
132 |
cacctcaaaagccttattgttaaaaatacaactattacgagacctccaaaccacccaaatcaccgcatgccaaatcaaccataccccttttttaagcttc |
231 |
Q |
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| T |
13855616 |
cacctcaataatcttattattaaaaatacaactattacgaga---------caaccaaaccaccgcatgcctaatcaaccacgccccttgtctaagcttc |
13855526 |
T |
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| Q |
232 |
tcagctcttacttctctaga |
251 |
Q |
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| T |
13855525 |
ttagctcttacttctctaga |
13855506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 31 - 251
Target Start/End: Original strand, 30635160 - 30635368
Alignment:
| Q |
31 |
cgagggttccaacaccactcgtaaaataaacaagttgcaatatgcaatctagccaagctccattgccatgacagcactttgatttggtccaccatatcct |
130 |
Q |
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| T |
30635160 |
cgagggttccaataccactcgtagaataaacacgtcgcaatgttcaatctagccaagcttcattgccacgccaacactttgatttgatccaccatatcct |
30635259 |
T |
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| Q |
131 |
ccacctcaaaagccttattgttaaaaatacaactattacgagacctccaaaccacccaaatcaccgcatgccaaatcaaccataccccttttttaagctt |
230 |
Q |
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| T |
30635260 |
ccacctcaataatcttattattaaaaatacaattatta-ga-----------caaccaaaccaccgcatgccaaatcaaccacgccccttgtctaagttt |
30635347 |
T |
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| Q |
231 |
ctcagctcttacttctctaga |
251 |
Q |
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| T |
30635348 |
cttagctcttacttatctaga |
30635368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 137
Target Start/End: Original strand, 6945238 - 6945353
Alignment:
| Q |
22 |
agacagaagcgagggttccaacaccactcgtaaaataaacaagttgcaatatgcaatctagccaagctccattgccatgacagcactttgatttggtcca |
121 |
Q |
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||||| |||||||||||||| |||||||||||||| |||||||||||||| | ||| ||| ||| || |||||||| || ||||| || | ||| |||| |
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| T |
6945238 |
agacaaaagcgagggttccatcaccactcgtaaaacaaacaagttgcaatgttcaacctactcaaacttcattgccacgagagcaccttaacttgatcca |
6945337 |
T |
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| Q |
122 |
ccatatcctccacctc |
137 |
Q |
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| T |
6945338 |
ccatctcatccacctc |
6945353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 84 - 212
Target Start/End: Complemental strand, 17778695 - 17778567
Alignment:
| Q |
84 |
caagctccattgccatgacagcactttgatttggtccaccatatcctccacctcaaaagccttattgttaaaaatacaactattacgagacctccaaacc |
183 |
Q |
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| T |
17778695 |
caagctccattgccatgacaacactttaatttgttccaccaactcatccaccccaaaaatcttattattaaaaatcagattattcctcaccttccaaacc |
17778596 |
T |
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| Q |
184 |
acccaaatcaccgcatgccaaatcaacca |
212 |
Q |
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| T |
17778595 |
atctaaaccaccgcatgccaaatcaacca |
17778567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 124
Target Start/End: Complemental strand, 30456285 - 30456198
Alignment:
| Q |
37 |
ttccaacaccactcgtaaaataaacaagttgcaatatgcaatctagccaagctccattgccatgacagcactttgatttggtccacca |
124 |
Q |
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| T |
30456285 |
ttccaacaccattcgtaaaataaacaagtctctatcttcaatctatccaaactccattgccacgctagaactttgatttgatccacca |
30456198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 20988969 - 20988933
Alignment:
| Q |
176 |
tccaaaccacccaaatcaccgcatgccaaatcaacca |
212 |
Q |
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| T |
20988969 |
tccaaaccacccaaaccaccgcatgccaaatcaacca |
20988933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 64
Target Start/End: Complemental strand, 20990864 - 20990828
Alignment:
| Q |
28 |
aagcgagggttccaacaccactcgtaaaataaacaag |
64 |
Q |
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| T |
20990864 |
aagcgagggttccaacaccactcgtagaataaacaag |
20990828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 227
Target Start/End: Complemental strand, 29127674 - 29127633
Alignment:
| Q |
186 |
ccaaatcaccgcatgccaaatcaaccataccccttttttaag |
227 |
Q |
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| T |
29127674 |
ccaaaccaccgcatgccaaatcaaccacaccccttttctaag |
29127633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 43460307 - 43460262
Alignment:
| Q |
19 |
ccaagacagaagcgagggttccaacaccactcgtaaaataaacaag |
64 |
Q |
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| T |
43460307 |
ccaagacaaaagcgaggattccagcaccactcgtaaaacaaacaag |
43460262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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