View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5304_low_1 (Length: 306)
Name: NF5304_low_1
Description: NF5304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5304_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 10 - 288
Target Start/End: Complemental strand, 34317302 - 34317029
Alignment:
| Q |
10 |
gcagagaacggcatgctgagaattattggagaaaggaagaaagaagctgagaaaaaaggtgatcgttggcacaaagttgaaagggtgtatggaaaattct |
109 |
Q |
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| T |
34317302 |
gcagagaacggcatgctgagaattattggagaaaggaagaaagaagctgagaaaaaaggtgatcgttggcacaaagttgaaagggtgtacggaaaattct |
34317203 |
T |
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| Q |
110 |
ggagacagttaagattgccagagaatgctgatttggattcaattaaggctaataaggaaaatggagttcttactttgacatttaataagttgtcacatgg |
209 |
Q |
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| T |
34317202 |
ggagacagttaagattgccagagaatgctgatttggattcaattaaggctaataaggaaaatggagttcttactttgacatttaataagttgtcgcatgg |
34317103 |
T |
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| Q |
210 |
taagatcaaaggttctagagttgttagcaaggatgaggaggatgagaaatcaggcaagatcaataataatggggatagt |
288 |
Q |
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| T |
34317102 |
taagatcaaaggttc-----ttgttagcaaggatgaggaggatgagaaatcaggcaagatcaataataatggggatagt |
34317029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 12 - 283
Target Start/End: Complemental strand, 34304781 - 34304510
Alignment:
| Q |
12 |
agagaacggcatgctgagaattattggagaaaggaagaaagaagctgagaaaaaaggtgatcgttggcacaaagttgaaagggtgtatggaaaattctgg |
111 |
Q |
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||||||| || |||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||| | || |||||| ||||||||||| ||| |
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| T |
34304781 |
agagaacagcgtgctgagagttattggagaaaggaagaaagaagtggagaagaaaggtgatcgttggcatagagctgaaagatcatatggaaaattttgg |
34304682 |
T |
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| Q |
112 |
agacagttaagattgccagagaatgctgatttggattcaattaaggctaataaggaaaatggagttcttactttgacatttaataagttgtcacatggta |
211 |
Q |
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| T |
34304681 |
aggcaatttagattgcctgaaaatgctgatttggattctgtgaaggctaagatagaaaatggtgttcttactttgacacttaataagttgtctcatgatc |
34304582 |
T |
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| Q |
212 |
agatcaaaggttctagagttgttagcaaggatgaggaggatgagaaatcaggcaagatcaataataatgggg |
283 |
Q |
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| T |
34304581 |
agattaaaagtactagagttgttagcattgatgaggagaatgagaaatcacccaaggtcaacaatgatgggg |
34304510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 12 - 267
Target Start/End: Original strand, 33426290 - 33426545
Alignment:
| Q |
12 |
agagaacggcatgctgagaattattggagaaaggaagaaagaagctgagaaaaaaggtgatcgttggcacaaagttgaaagggtgtatggaaaattctgg |
111 |
Q |
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||||||| || |||||||| | ||||||||||| |||||||||| ||||||||||||||||||||||| | || |||||| ||||||||||| ||| |
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| T |
33426290 |
agagaacagcgtgctgagagtgattggagaaagaaagaaagaagaggagaaaaaaggtgatcgttggcatagagctgaaagatcatatggaaaattttgg |
33426389 |
T |
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| Q |
112 |
agacagttaagattgccagagaatgctgatttggattcaattaaggctaataaggaaaatggagttcttactttgacatttaataagttgtcacatggta |
211 |
Q |
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| T |
33426390 |
agacagtttagattgcctgaaaatgctgatttggattcggttaaggccaagatggaaaatggtgttcttactttaacacttcgtaagttgtcacatggta |
33426489 |
T |
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| Q |
212 |
agatcaaaggttctagagttgttagcaaggatgaggaggatgagaaatcaggcaag |
267 |
Q |
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| T |
33426490 |
agattaaaagtactagacttgttagcattgaggaggagaatgagaaagcaagcaag |
33426545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 34 - 283
Target Start/End: Original strand, 34314475 - 34314727
Alignment:
| Q |
34 |
attggagaaaggaagaaagaagctgagaaaaaaggtgatcgttggcacaaagttgaaagggtgtatggaaaattctggagacagttaagattgccagaga |
133 |
Q |
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|||||||||||||||||||||| ||||| ||||||||||||||||| | || ||||||| ||||||||||||||||||||||| | |||||||| |||| |
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| T |
34314475 |
attggagaaaggaagaaagaagtggagaagaaaggtgatcgttggcatagagctgaaaggatgtatggaaaattctggagacagcttagattgccggaga |
34314574 |
T |
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| Q |
134 |
atgctgatttggattcaattaaggctaataaggaaaatggagttcttactttgacatttaataagttgtcacatg---gtaagatcaaaggttctagagt |
230 |
Q |
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| T |
34314575 |
atgctgattttgattccgtgaaggctaaggtggaaaatggtgttcttattttgacacttaataagctgtcccatgaatatcagattaaaagtattagagt |
34314674 |
T |
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| Q |
231 |
tgttagcaaggatgaggaggatgagaaatcaggcaagatcaataataatgggg |
283 |
Q |
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|||||||| ||| ||||| ||||||||||||||||| | |||||| |||||| |
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| T |
34314675 |
tgttagcattgataaggagaatgagaaatcaggcaagcttaataatgatgggg |
34314727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 40 - 258
Target Start/End: Complemental strand, 34322928 - 34322710
Alignment:
| Q |
40 |
gaaaggaagaaagaagctgagaaaaaaggtgatcgttggcacaaagttgaaagggtgtatggaaaattctggagacagttaagattgccagagaatgctg |
139 |
Q |
| |
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|||||||||||||||| |||||| ||||||||| |||||| | ||||||||| ||||| ||||||||||| || || |||||||| || |||| || |
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| T |
34322928 |
gaaaggaagaaagaagaagagaaacaaggtgatcattggcatagagttgaaagatcttatgggaaattctggaggcaatttagattgcctgaaaatgttg |
34322829 |
T |
|
| Q |
140 |
atttggattcaattaaggctaataaggaaaatggagttcttactttgacatttaataagttgtcacatggtaagatcaaaggttctagagttgttagcaa |
239 |
Q |
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| T |
34322828 |
atttggattcagtgaaggctaagatggaaaatggtgtacttactttgacacttaataagttgtcacatgataagatcaaaggtcctagaatggttagcat |
34322729 |
T |
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| Q |
240 |
ggatgaggaggatgagaaa |
258 |
Q |
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| T |
34322728 |
tgctgaggaggatgagaaa |
34322710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 40 - 238
Target Start/End: Original strand, 34312043 - 34312241
Alignment:
| Q |
40 |
gaaaggaagaaagaagctgagaaaaaaggtgatcgttggcacaaagttgaaagggtgtatggaaaattctggagacagttaagattgccagagaatgctg |
139 |
Q |
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|||||||||||||||| |||||| ||||||||| |||||||| ||||||||| ||||||||||||||||| || || ||||||||||| |||| || |
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| T |
34312043 |
gaaaggaagaaagaagaagagaaacaaggtgatcattggcacagagttgaaagatcttatggaaaattctggaggcaatttagattgccagaaaatgttg |
34312142 |
T |
|
| Q |
140 |
atttggattcaattaaggctaataaggaaaatggagttcttactttgacatttaataagttgtcacatggtaagatcaaaggttctagagttgttagca |
238 |
Q |
| |
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||||||| ||| |||||||||| | ||||||||| || |||||||||||| |||||||||||||||| | ||||| |||||| ||||| | ||||||| |
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| T |
34312143 |
atttggactcagttaaggctaaaatggaaaatggtgtacttactttgacacttaataagttgtcacaagataagactaaaggtcctagaatggttagca |
34312241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 12 - 192
Target Start/End: Complemental strand, 25651417 - 25651237
Alignment:
| Q |
12 |
agagaacggcatgctgagaattattggagaaaggaagaaagaagctgagaaaaaaggtgatcgttggcacaaagttgaaagggtgtatggaaaattctgg |
111 |
Q |
| |
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||||||| || |||| ||| |||||||||||||||| |||||| ||||| ||| ||||||||||||| | |||||||||| ||| ||||||||||||| |
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| T |
25651417 |
agagaacagcgtgctaagagttattggagaaaggaaaaaagaacaggagaacaaaagtgatcgttggcatagagttgaaaggatgtgtggaaaattctgg |
25651318 |
T |
|
| Q |
112 |
agacagttaagattgccagagaatgctgatttggattcaattaaggctaataaggaaaatggagttcttactttgacattt |
192 |
Q |
| |
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||||| | ||||| ||||| |||| |||||||||||| |||||| | || | |||| |||| ||||||||||| |||||| |
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| T |
25651317 |
agacaacttagattaccagaaaatgttgatttggattcgattaagacaaagatggaagatggtgttcttactttaacattt |
25651237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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