View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5304_low_2 (Length: 282)
Name: NF5304_low_2
Description: NF5304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5304_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 54721108 - 54720840
Alignment:
| Q |
1 |
gaataaaataggcttcatatcacttcattttataagaccacatttatccttaaacgaaaaaataaatgaattaatgtggctttgcgtgagaaagtaatat |
100 |
Q |
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| T |
54721108 |
gaataaaataggcttcatatcacttcattttataacaccacatttatccttaaacgaaaaaataaatgaattaatgtggctttgcgtgagaaagtaatat |
54721009 |
T |
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| Q |
101 |
tttgacaaaactaagctagtttaaccgtgtgggaagcatgcatggcgttaaatatgatggttaattaatggaccagccaattgttacatgaggtataaat |
200 |
Q |
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| T |
54721008 |
tttgacaaaactaagctagtttaaccgtgtgggaagcatgcatggcgttaaatatgatggttaattaatggaccagccgattgttacatgaggtataaat |
54720909 |
T |
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| Q |
201 |
agaaattaattaggtacatgatagaaatactggctaacagatgaaaatagagggtgatcacacttttga |
269 |
Q |
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| T |
54720908 |
agaaattaattaggtacatgatagaaatactggctaacagatgaaaatataggatgatcacacttttga |
54720840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 54714188 - 54714013
Alignment:
| Q |
1 |
gaataaaataggcttcatatcacttcattttataagaccacatttatccttaaacgaaaaaataaatgaattaatgtggctttgcgtgagaaagtaatat |
100 |
Q |
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| T |
54714188 |
gaataaaataggcttcatatcacttcaatttataacacaacatttttccttaaacgaaaaaataagtgaattaatgtggctttgcttgagaaaataatat |
54714089 |
T |
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| Q |
101 |
tttgacaaaactaagctagtttaaccgtgtgggaagcatgcatggcgttaaatatgatggttaattaatggaccag |
176 |
Q |
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| T |
54714088 |
tttgacaaaactaagctagtttaaccgtgtgggaagcatgcatggcgttaaatatgatggttaattaattgaccag |
54714013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 13 - 223
Target Start/End: Complemental strand, 54680457 - 54680248
Alignment:
| Q |
13 |
cttcatatcacttcattttataagaccacatttatccttaaacgaaaaaataaatgaattaatgtggctttgcgtgagaa---agtaatattttgacaaa |
109 |
Q |
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| T |
54680457 |
cttcttatcacttcaatttataacaccacatttttccataaacgaaaaaataaatgaattagtgtggctttgcgtgagaaattagtaatattttgacaaa |
54680358 |
T |
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| Q |
110 |
actaagctagtttaaccgtgtgggaagcatgcatggcgttaaatatgatggttaattaatggaccagccaattgttacatgaggtataaatagaaattaa |
209 |
Q |
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| T |
54680357 |
agtaagctagtttaaccgtgtgggaa----gcatggcgttaaatatgatggttaattaattgaccggccaattgttatataaagaataaatagaaactaa |
54680262 |
T |
|
| Q |
210 |
ttaggtacatgata |
223 |
Q |
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|||| | ||||||| |
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| T |
54680261 |
ttagttgcatgata |
54680248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 154
Target Start/End: Complemental strand, 54726731 - 54726646
Alignment:
| Q |
69 |
aattaatgtggctttgcgtgagaaagtaatattttgacaaaactaagcta--gtttaaccgtgtgggaagcatgcatggcgttaaata |
154 |
Q |
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| T |
54726731 |
aattaatgtgactttgcgttagaaa--aatattttgtcaaaattaaggtatagtttaaccgtgtgggaagcatgcatggtgtcaaata |
54726646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 69 - 154
Target Start/End: Complemental strand, 5302597 - 5302512
Alignment:
| Q |
69 |
aattaatgtggctttgcgtgagaaagtaatattttgacaaaactaagcta--gtttaaccgtgtgggaagcatgcatggcgttaaata |
154 |
Q |
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| T |
5302597 |
aattaatgtgactttgcgtgagaaa--aatattttgtcaaaattaaggtatagtttaaccgtgtgggaagcatgcatggtgtaaaata |
5302512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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