View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5304_low_3 (Length: 262)

Name: NF5304_low_3
Description: NF5304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5304_low_3
NF5304_low_3
[»] chr1 (3 HSPs)
chr1 (1-241)||(31280370-31280609)
chr1 (31-104)||(34372459-34372532)
chr1 (31-102)||(13855021-13855092)
[»] chr5 (4 HSPs)
chr5 (31-104)||(6522150-6522223)
chr5 (28-104)||(38779445-38779521)
chr5 (28-99)||(10842611-10842682)
chr5 (26-84)||(40210963-40211021)
[»] chr7 (2 HSPs)
chr7 (28-84)||(34412165-34412221)
chr7 (32-95)||(24547035-24547098)
[»] chr6 (2 HSPs)
chr6 (31-101)||(9681006-9681076)
chr6 (33-104)||(9681952-9682020)
[»] chr8 (2 HSPs)
chr8 (31-97)||(11319352-11319418)
chr8 (31-84)||(43304349-43304402)
[»] chr4 (4 HSPs)
chr4 (35-103)||(23033487-23033554)
chr4 (35-92)||(2888809-2888865)
chr4 (31-94)||(26037221-26037285)
chr4 (35-103)||(29262535-29262602)
[»] chr3 (2 HSPs)
chr3 (58-94)||(532296-532332)
chr3 (58-94)||(564880-564916)


Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 31280609 - 31280370
Alignment:
Q  1 cctagctctccaactacgtagcagctacaatacctttctattatccaagcttagggtttacaaattgcaacttgtgtttaaatattacggtccattttac 100  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31280609 cctaggtctccaactacatagcagctacaatacctttctattatccaagcttagggtttacaaattgcaacttgtgtttaaatattacggtccattttac 31280510  T
Q  101 aagaataaccatgaatcgtaccaaaggatacttcatccccgcacccctccagtcatagtccaagtagcgaatgagtcataccaaacccaactgaatatgg 200  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  31280509 aagaataaccatgaatcgtaccaaaggatacttcatccccacacccc-ccggtcatagtccaagtagcgaatgagtcataccaaacccaactgaatatgg 31280411  T
Q  201 tgttataaattgtaattttatatgaacctatgtgttctctg 241  Q
    ||||||||||||||||||||||||   ||||||||| ||||    
T  31280410 tgttataaattgtaattttatatgcggctatgtgttttctg 31280370  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 104
Target Start/End: Original strand, 34372459 - 34372532
Alignment:
Q  31 tacctttctattatccaagcttagggtttacaaattgcaacttgtgtttaaatattacggtccattttacaaga 104  Q
    |||| ||||||||| ||||||||||||||||||| | |||||||| |||||||| |||| |||| |||||||||    
T  34372459 tacccttctattattcaagcttagggtttacaaagtacaacttgtatttaaatactacgatccagtttacaaga 34372532  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 102
Target Start/End: Original strand, 13855021 - 13855092
Alignment:
Q  31 tacctttctattatccaagcttagggtttacaaattgcaacttgtgtttaaatattacggtccattttacaa 102  Q
    |||||||||||||  |||||||||||  |||| ||| |||||| |||||||||| ||||||| | |||||||    
T  13855021 tacctttctattaatcaagcttagggcatacagattacaacttatgtttaaatactacggtctagtttacaa 13855092  T

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Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 31 - 104
Target Start/End: Original strand, 6522150 - 6522223
Alignment:
Q  31 tacctttctattatccaagcttagggtttacaaattgcaacttgtgtttaaatattacggtccattttacaaga 104  Q
    |||||||||||||| ||| |||||| |||||||||| ||||||||||||||||| ||||||| | |||||||||    
T  6522150 tacctttctattattcaaacttaggatttacaaattacaacttgtgtttaaatactacggtctagtttacaaga 6522223  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 104
Target Start/End: Complemental strand, 38779521 - 38779445
Alignment:
Q  28 caatacctttctattatccaagcttagggtttacaaattgcaacttgtgtttaaatattacggtccattttacaaga 104  Q
    ||||||||||||||||  |||||||||||||| || | | ||||||||||||||||| ||| ||||| |||||||||    
T  38779521 caatacctttctattactcaagcttagggtttgcatagtacaacttgtgtttaaatactacagtccagtttacaaga 38779445  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 10842611 - 10842682
Alignment:
Q  28 caatacctttctattatccaagcttagggtttacaaattgcaacttgtgtttaaatattacggtccatttta 99  Q
    ||||| ||||||||||| |||||||||| |||||| ||| ||| ||||||||||||| ||||||||| ||||    
T  10842611 caataactttctattattcaagcttaggatttacatattacaatttgtgtttaaatactacggtccaattta 10842682  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 40210963 - 40211021
Alignment:
Q  26 tacaatacctttctattatccaagcttagggtttacaaattgcaacttgtgtttaaata 84  Q
    ||||||| ||||||||||| ||||||||||||||||| ||| || ||||||| ||||||    
T  40210963 tacaatatctttctattattcaagcttagggtttacatattacagcttgtgtataaata 40211021  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 34412165 - 34412221
Alignment:
Q  28 caatacctttctattatccaagcttagggtttacaaattgcaacttgtgtttaaata 84  Q
    ||||||||||||||||| ||||||||||||||||| ||| ||| |||||||||||||    
T  34412165 caatacctttctattattcaagcttagggtttacagattacaatttgtgtttaaata 34412221  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 95
Target Start/End: Original strand, 24547035 - 24547098
Alignment:
Q  32 acctttctattatccaagcttagggtttacaaattgcaacttgtgtttaaatattacggtccat 95  Q
    ||||||||||||  ||||||||||||||| ||| | ||||||||||||||||| ||| ||||||    
T  24547035 acctttctattaatcaagcttagggtttataaagtacaacttgtgtttaaatactacagtccat 24547098  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 101
Target Start/End: Complemental strand, 9681076 - 9681006
Alignment:
Q  31 tacctttctattatccaagcttagggtttacaaattgcaacttgtgtttaaatattacggtccattttaca 101  Q
    ||||||||||||| | || ||||||||||| | ||| |||||||| |||||||||||||||||| ||||||    
T  9681076 tacctttctattaactaaacttagggtttatagattacaacttgtatttaaatattacggtccagtttaca 9681006  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 104
Target Start/End: Original strand, 9681952 - 9682020
Alignment:
Q  33 cctttctattatccaagcttagggtttacaaattgcaacttgtgtttaaatattacggtccattttacaaga 104  Q
    |||||||||||| ||||||||| ||||||||||| | || |||||||||||||   |||||| |||||||||    
T  9681952 cctttctattattcaagcttagagtttacaaattacgacctgtgtttaaatat---ggtccagtttacaaga 9682020  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 11319418 - 11319352
Alignment:
Q  31 tacctttctattatccaagcttagggtttacaaattgcaacttgtgtttaaatattacggtccattt 97  Q
    |||||||||||||| ||||||||| ||||||| ||| ||||||||| |||||||  ||||| |||||    
T  11319418 tacctttctattattcaagcttagagtttacagattacaacttgtgcttaaatacgacggttcattt 11319352  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 84
Target Start/End: Original strand, 43304349 - 43304402
Alignment:
Q  31 tacctttctattatccaagcttagggtttacaaattgcaacttgtgtttaaata 84  Q
    |||||||||| ||| ||| ||||||||||| ||| | |||||||||||||||||    
T  43304349 tacctttctaatattcaaacttagggtttataaagtacaacttgtgtttaaata 43304402  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 103
Target Start/End: Original strand, 23033487 - 23033554
Alignment:
Q  35 tttctattatccaagcttagggtttacaaattgcaacttgtgtttaaatattacggtccattttacaag 103  Q
    |||||||||| |||| ||||| || |||||||||||||||||||||| || |||||| || ||||||||    
T  23033487 tttctattattcaagtttaggatt-acaaattgcaacttgtgtttaattactacggttcactttacaag 23033554  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 92
Target Start/End: Original strand, 2888809 - 2888865
Alignment:
Q  35 tttctattatccaagcttagggtttacaaattgcaacttgtgtttaaatattacggtc 92  Q
    |||||||||| ||||||||| ||| ||| ||| ||||||||||||||||| |||||||    
T  2888809 tttctattattcaagcttagagtt-acagattacaacttgtgtttaaataatacggtc 2888865  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 94
Target Start/End: Original strand, 26037221 - 26037285
Alignment:
Q  31 tacctttctattatccaa-gcttagggtttacaaattgcaacttgtgtttaaatattacggtcca 94  Q
    |||||||||||||| ||| ||||| |||||||||||  ||||| |||||||||||  ||||||||    
T  26037221 tacctttctattattcaaagcttatggtttacaaatgacaactcgtgtttaaatacaacggtcca 26037285  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 103
Target Start/End: Original strand, 29262535 - 29262602
Alignment:
Q  35 tttctattatccaagcttagggtttacaaattgcaacttgtgtttaaatattacggtccattttacaag 103  Q
    |||||||||||||||||||||| ||| | ||| |||||||||||| || | |||||| || ||||||||    
T  29262535 tttctattatccaagcttaggg-ttatagattacaacttgtgtttcaaaactacggttcagtttacaag 29262602  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 94
Target Start/End: Original strand, 532296 - 532332
Alignment:
Q  58 ttacaaattgcaacttgtgtttaaatattacggtcca 94  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  532296 ttacaaattacaacttgtgtttaaatattacagtcca 532332  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 94
Target Start/End: Original strand, 564880 - 564916
Alignment:
Q  58 ttacaaattgcaacttgtgtttaaatattacggtcca 94  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  564880 ttacaaattacaacttgtgtttaaatattacagtcca 564916  T

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