View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5304_low_4 (Length: 257)

Name: NF5304_low_4
Description: NF5304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5304_low_4
NF5304_low_4
[»] chr6 (6 HSPs)
chr6 (18-119)||(34048563-34048664)
chr6 (117-249)||(34046787-34046927)
chr6 (14-53)||(6271488-6271527)
chr6 (15-59)||(4820509-4820553)
chr6 (15-59)||(16199592-16199636)
chr6 (15-58)||(26595491-26595534)
[»] chr7 (9 HSPs)
chr7 (14-58)||(1284555-1284599)
chr7 (15-59)||(7701686-7701730)
chr7 (15-59)||(46022152-46022196)
chr7 (31-61)||(2305753-2305783)
chr7 (16-58)||(49069387-49069429)
chr7 (15-56)||(4292571-4292612)
chr7 (15-66)||(35072239-35072291)
chr7 (15-66)||(35098580-35098632)
chr7 (19-59)||(47356130-47356170)
[»] chr4 (14 HSPs)
chr4 (15-59)||(56363930-56363974)
chr4 (16-58)||(32866413-32866455)
chr4 (15-59)||(38382463-38382507)
chr4 (15-59)||(47181983-47182027)
chr4 (15-59)||(48402082-48402126)
chr4 (14-57)||(336694-336737)
chr4 (16-58)||(1627441-1627483)
chr4 (16-58)||(12595516-12595558)
chr4 (14-56)||(50889961-50890003)
chr4 (15-60)||(4974239-4974284)
chr4 (17-58)||(41849835-41849876)
chr4 (16-57)||(50831642-50831683)
chr4 (15-59)||(34616703-34616747)
chr4 (16-56)||(42491217-42491257)
[»] chr3 (14 HSPs)
chr3 (18-58)||(6178311-6178351)
chr3 (16-61)||(35376964-35377009)
chr3 (15-59)||(21217654-21217698)
chr3 (15-59)||(37056942-37056986)
chr3 (15-59)||(44383331-44383375)
chr3 (15-58)||(819099-819142)
chr3 (15-66)||(11075254-11075305)
chr3 (16-58)||(43158156-43158198)
chr3 (30-59)||(17550295-17550324)
chr3 (16-56)||(9719336-9719376)
chr3 (15-55)||(23592600-23592640)
chr3 (15-55)||(23600735-23600775)
chr3 (15-55)||(35201323-35201363)
chr3 (19-55)||(46361600-46361636)
[»] chr2 (11 HSPs)
chr2 (16-57)||(27490617-27490658)
chr2 (15-59)||(3097746-3097790)
chr2 (16-52)||(39147909-39147945)
chr2 (15-57)||(32628325-32628367)
chr2 (16-58)||(37037381-37037423)
chr2 (18-59)||(25270467-25270508)
chr2 (21-58)||(42821506-42821543)
chr2 (15-59)||(13333055-13333099)
chr2 (15-59)||(17767929-17767973)
chr2 (16-56)||(32701233-32701273)
chr2 (15-55)||(41056636-41056676)
[»] chr5 (5 HSPs)
chr5 (15-59)||(17626128-17626172)
chr5 (16-58)||(7552853-7552895)
chr5 (19-57)||(17154421-17154459)
chr5 (16-60)||(39054730-39054774)
chr5 (31-59)||(42475557-42475585)
[»] chr8 (4 HSPs)
chr8 (16-57)||(10592196-10592237)
chr8 (17-58)||(13106624-13106665)
chr8 (17-58)||(39856182-39856223)
chr8 (19-51)||(7586056-7586088)
[»] chr1 (2 HSPs)
chr1 (16-57)||(10338985-10339026)
chr1 (15-59)||(46907337-46907381)


Alignment Details
Target: chr6 (Bit Score: 82; Significance: 8e-39; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 34048664 - 34048563
Alignment:
Q  18 aaagttgtcatgaaaatggttgttcaaataacacaactcttattcttatatgtttttcactatctatttcactttatagccattattattgtctttatca 117  Q
    |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||    
T  34048664 aaagttgtaattaaaatggttgttcaaataacacaactcttattcttatatgtttttcaccatctattttactttatagccattattattgtctatatca 34048565  T
Q  118 tt 119  Q
    ||    
T  34048564 tt 34048563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 117 - 249
Target Start/End: Complemental strand, 34046927 - 34046787
Alignment:
Q  117 attaatatatggaattactcaaaccataacctgaatgttttgtttgttacaaaagtaatacaaacaacatttcaacaatatatata--------tagttg 208  Q
    |||||||||| |||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||         |||||    
T  34046927 attaatatattgaattactcaaggcataacctgaacgttttgtttgttacaaaagtaatacaaacaacatttcaacaatatatataatatgaacaagttg 34046828  T
Q  209 gtaatcttatggttgtttttatataatggttttgatgatgt 249  Q
    ||||||||| | |||||||||| |||||||||| |||||||    
T  34046827 gtaatcttaggattgtttttatttaatggttttaatgatgt 34046787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 6271488 - 6271527
Alignment:
Q  14 atcaaaagttgtcatgaaaatggttgttcaaataacacaa 53  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  6271488 atcaaaagttgtcattaaaatggttgttcaaataacacaa 6271527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 4820509 - 4820553
Alignment:
Q  15 tcaaaagttgtcatgaaaatggttgttcaaataacacaactctta 59  Q
    ||||||||| ||||| |||| ||||||||||||||||||||||||    
T  4820509 tcaaaagttatcatgtaaatagttgttcaaataacacaactctta 4820553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 16199592 - 16199636
Alignment:
Q  15 tcaaaagttgtcatgaaaatggttgttcaaataacacaactctta 59  Q
    ||||||||||||||  |||||| ||||||||||||||||||||||    
T  16199592 tcaaaagttgtcatataaatggatgttcaaataacacaactctta 16199636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 26595491 - 26595534
Alignment:
Q  15 tcaaaagttgtcatgaaaatggttgttcaaataacacaactctt 58  Q
    ||||||||||||||  |||||| |||||||||||||||||||||    
T  26595491 tcaaaagttgtcatataaatggatgttcaaataacacaactctt 26595534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 1284555 - 1284599
Alignment:
Q  14 atcaaaagttgtcatgaaaatggttgttcaaataacacaactctt 58  Q
    |||||||||| |||| |||||||||||||||||||||||||||||    
T  1284555 atcaaaagttatcataaaaatggttgttcaaataacacaactctt 1284599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 7701686 - 7701730
Alignment:
Q  15 tcaaaagttgtcatgaaaatggttgttcaaataacacaactctta 59  Q
    ||||||||||||||  |||||| ||||||||||||||||||||||    
T  7701686 tcaaaagttgtcatataaatggatgttcaaataacacaactctta 7701730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 46022196 - 46022152
Alignment:
Q  15 tcaaaagttgtcatgaaaatggttgttcaaataacacaactctta 59  Q
    ||||||||||||||  |||||| ||||||||||||||||||||||    
T  46022196 tcaaaagttgtcatataaatggatgttcaaataacacaactctta 46022152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 61
Target Start/End: Complemental strand, 2305783 - 2305753
Alignment:
Q  31 aaatggttgttcaaataacacaactcttatt 61  Q
    |||||||||||||||||||||||||||||||    
T  2305783 aaatggttgttcaaataacacaactcttatt 2305753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 49069387 - 49069429
Alignment:
Q  16 caaaagttgtcatgaaaatggttgttcaaataacacaactctt 58  Q
    ||||||||||||   ||||||||||||||||||||||||||||    
T  49069387 caaaagttgtcaatcaaatggttgttcaaataacacaactctt 49069429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 4292571 - 4292612
Alignment:
Q  15 tcaaaagttgtcatgaaaatggttgttcaaataacacaactc 56  Q
    |||||||||||||||||||||| |||| ||||||||| ||||    
T  4292571 tcaaaagttgtcatgaaaatggatgtttaaataacactactc 4292612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 35072291 - 35072239
Alignment:
Q  15 tcaaaagttgtcatgaaaatggttgttcaaataacacaactct-tattcttat 66  Q
    ||||||||||||||  |||||| |||||| ||||||||||||| |||||||||    
T  35072291 tcaaaagttgtcatataaatggatgttcagataacacaactctatattcttat 35072239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 35098632 - 35098580
Alignment:
Q  15 tcaaaagttgtcatgaaaatggttgttcaaataacacaactct-tattcttat 66  Q
    ||||||||||||||  |||||| | |||||||||||||||||| |||||||||    
T  35098632 tcaaaagttgtcatataaatggatattcaaataacacaactctatattcttat 35098580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 47356130 - 47356170
Alignment:
Q  19 aagttgtcatgaaaatggttgttcaaataacacaactctta 59  Q
    ||||||||||  ||||||||||| |||||||||||||||||    
T  47356130 aagttgtcatacaaatggttgttaaaataacacaactctta 47356170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 56363974 - 56363930
Alignment:
Q  15 tcaaaagttgtcatgaaaatggttgttcaaataacacaactctta 59  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||    
T  56363974 tcaaaagttgtcatgtaaatggatgttcaaataacacaactctta 56363930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 32866413 - 32866455
Alignment:
Q  16 caaaagttgtcatgaaaatggttgttcaaataacacaactctt 58  Q
    ||||||||||||| |||||| ||||||||||||||||||||||    
T  32866413 caaaagttgtcattaaaatgattgttcaaataacacaactctt 32866455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 38382463 - 38382507
Alignment:
Q  15 tcaaaagttgtcatgaaaatggttgttcaaataacacaactctta 59  Q
    ||||||||||||||  |||||| ||||||||||||||||||||||    
T  38382463 tcaaaagttgtcatataaatggatgttcaaataacacaactctta 38382507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 47181983 - 47182027
Alignment:
Q  15 tcaaaagttgtcatgaaaatggttgttcaaataacacaactctta 59  Q
    ||||||||||||||  |||||| ||||||||||||||||||||||    
T  47181983 tcaaaagttgtcatataaatggatgttcaaataacacaactctta 47182027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 48402126 - 48402082
Alignment:
Q  15 tcaaaagttgtcatgaaaatggttgttcaaataacacaactctta 59  Q
    ||||||||||||||  |||||| ||||||||||||||||||||||    
T  48402126 tcaaaagttgtcatataaatggatgttcaaataacacaactctta 48402082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 57
Target Start/End: Complemental strand, 336737 - 336694
Alignment:
Q  14 atcaaaagttgtcatgaaaatggttgttcaaataacacaactct 57  Q
    ||||||||||||||| ||||  ||||||||||||||||||||||    
T  336737 atcaaaagttgtcataaaaaaagttgttcaaataacacaactct 336694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 1627483 - 1627441
Alignment:
Q  16 caaaagttgtcatgaaaatggttgttcaaataacacaactctt 58  Q
    |||||||||||||  |||| |||||||||||||||||||||||    
T  1627483 caaaagttgtcatccaaatagttgttcaaataacacaactctt 1627441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 12595558 - 12595516
Alignment:
Q  16 caaaagttgtcatgaaaatggttgttcaaataacacaactctt 58  Q
    ||||| ||||||| ||||||||||||||||||||||| |||||    
T  12595558 caaaaattgtcatcaaaatggttgttcaaataacacatctctt 12595516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 50890003 - 50889961
Alignment:
Q  14 atcaaaagttgtcatgaaaatggttgttcaaataacacaactc 56  Q
    |||||||||||| || |||| ||||||||||||||||||||||    
T  50890003 atcaaaagttgttataaaaaaggttgttcaaataacacaactc 50889961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 4974239 - 4974284
Alignment:
Q  15 tcaaaagttgtcatgaaaatggttgttcaaataacacaactcttat 60  Q
    ||||||||||| || |||||| | ||||||||||||||||||||||    
T  4974239 tcaaaagttgtgattaaaatgctcgttcaaataacacaactcttat 4974284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 41849835 - 41849876
Alignment:
Q  17 aaaagttgtcatgaaaatggttgttcaaataacacaactctt 58  Q
    |||| ||||||| ||||||||||||||||| |||||||||||    
T  41849835 aaaaattgtcattaaaatggttgttcaaatcacacaactctt 41849876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 50831683 - 50831642
Alignment:
Q  16 caaaagttgtcatgaaaatggttgttcaaataacacaactct 57  Q
    ||||||||||||   |||||||||||||||||||||||||||    
T  50831683 caaaagttgtcaatcaaatggttgttcaaataacacaactct 50831642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 34616703 - 34616747
Alignment:
Q  15 tcaaaagttgtcatgaaaatggttgttcaaataacacaactctta 59  Q
    ||||||||||||||  |||| | ||||||||||||||||||||||    
T  34616703 tcaaaagttgtcatataaatagatgttcaaataacacaactctta 34616747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 42491217 - 42491257
Alignment:
Q  16 caaaagttgtcatgaaaatggttgttcaaataacacaactc 56  Q
    ||||||||||||   ||||||||||||||||||||||||||    
T  42491217 caaaagttgtcaatcaaatggttgttcaaataacacaactc 42491257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 6178351 - 6178311
Alignment:
Q  18 aaagttgtcatgaaaatggttgttcaaataacacaactctt 58  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  6178351 aaagttgtcataaaaatggttgttcaaataacacaactctt 6178311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 35377009 - 35376964
Alignment:
Q  16 caaaagttgtcatgaaaatggttgttcaaataacacaactcttatt 61  Q
    |||||||||||||  |||||| ||||||||||||||||||||||||    
T  35377009 caaaagttgtcatctaaatggatgttcaaataacacaactcttatt 35376964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 21217654 - 21217698
Alignment:
Q  15 tcaaaagttgtcatgaaaatggttgttcaaataacacaactctta 59  Q
    ||||||||||||||  |||||| ||||||||||||||||||||||    
T  21217654 tcaaaagttgtcatataaatggatgttcaaataacacaactctta 21217698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 37056986 - 37056942
Alignment:
Q  15 tcaaaagttgtcatgaaaatggttgttcaaataacacaactctta 59  Q
    ||||||||||||||  |||||| ||||||||||||||||||||||    
T  37056986 tcaaaagttgtcatataaatggatgttcaaataacacaactctta 37056942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 44383331 - 44383375
Alignment:
Q  15 tcaaaagttgtcatgaaaatggttgttcaaataacacaactctta 59  Q
    ||||||||||||||  |||||| ||||||||||||||||||||||    
T  44383331 tcaaaagttgtcatataaatggatgttcaaataacacaactctta 44383375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 58
Target Start/End: Complemental strand, 819142 - 819099
Alignment:
Q  15 tcaaaagttgtcatgaaaatggttgttcaaataacacaactctt 58  Q
    |||||||||||||| |||||||||||| |||||||||| |||||    
T  819142 tcaaaagttgtcatcaaaatggttgtttaaataacacatctctt 819099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 11075305 - 11075254
Alignment:
Q  15 tcaaaagttgtcatgaaaatggttgttcaaataacacaactcttattcttat 66  Q
    ||||||||||||||  |||||||||||||||||||| |||||| ||| ||||    
T  11075305 tcaaaagttgtcatacaaatggttgttcaaataacataactctaatttttat 11075254  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 43158198 - 43158156
Alignment:
Q  16 caaaagttgtcatgaaaatggttgttcaaataacacaactctt 58  Q
    ||||| || |||| |||||||||||||||||||||||||||||    
T  43158198 caaaatttatcataaaaatggttgttcaaataacacaactctt 43158156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 59
Target Start/End: Original strand, 17550295 - 17550324
Alignment:
Q  30 aaaatggttgttcaaataacacaactctta 59  Q
    ||||||||||||||||||||||||||||||    
T  17550295 aaaatggttgttcaaataacacaactctta 17550324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 9719376 - 9719336
Alignment:
Q  16 caaaagttgtcatgaaaatggttgttcaaataacacaactc 56  Q
    ||||||||||||   ||||||||||||||||||||||||||    
T  9719376 caaaagttgtcaatcaaatggttgttcaaataacacaactc 9719336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 23592600 - 23592640
Alignment:
Q  15 tcaaaagttgtcatgaaaatggttgttcaaataacacaact 55  Q
    ||||||||||||||  |||||| ||||||||||||||||||    
T  23592600 tcaaaagttgtcatataaatggatgttcaaataacacaact 23592640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 23600735 - 23600775
Alignment:
Q  15 tcaaaagttgtcatgaaaatggttgttcaaataacacaact 55  Q
    ||||||||||||||  |||||| ||||||||||||||||||    
T  23600735 tcaaaagttgtcatataaatggatgttcaaataacacaact 23600775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 35201363 - 35201323
Alignment:
Q  15 tcaaaagttgtcatgaaaatggttgttcaaataacacaact 55  Q
    ||||||||||||||  |||||| ||||||||||||||||||    
T  35201363 tcaaaagttgtcatttaaatggatgttcaaataacacaact 35201323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 46361600 - 46361636
Alignment:
Q  19 aagttgtcatgaaaatggttgttcaaataacacaact 55  Q
    |||||||||| ||||||||| ||||||||||||||||    
T  46361600 aagttgtcattaaaatggttattcaaataacacaact 46361636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 27490658 - 27490617
Alignment:
Q  16 caaaagttgtcatgaaaatggttgttcaaataacacaactct 57  Q
    ||||||||||||| ||||||| ||||||||||||||||||||    
T  27490658 caaaagttgtcatcaaaatggatgttcaaataacacaactct 27490617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 3097790 - 3097746
Alignment:
Q  15 tcaaaagttgtcatgaaaatggttgttcaaataacacaactctta 59  Q
    ||||||||||||||  |||||| ||||||||||||||||||||||    
T  3097790 tcaaaagttgtcatataaatggatgttcaaataacacaactctta 3097746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 39147909 - 39147945
Alignment:
Q  16 caaaagttgtcatgaaaatggttgttcaaataacaca 52  Q
    ||||||||||||| |||||||||||||||||||||||    
T  39147909 caaaagttgtcattaaaatggttgttcaaataacaca 39147945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 32628325 - 32628367
Alignment:
Q  15 tcaaaagttgtcatgaaaatggttgttcaaataacacaactct 57  Q
    ||||||||| |||| ||||||||||||||||||||| ||||||    
T  32628325 tcaaaagttatcattaaaatggttgttcaaataacaaaactct 32628367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 37037381 - 37037423
Alignment:
Q  16 caaaagttgtcatgaaaatggttgttcaaataacacaactctt 58  Q
    |||||||||| || ||| |||||||||||||||||||||||||    
T  37037381 caaaagttgttataaaattggttgttcaaataacacaactctt 37037423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 25270508 - 25270467
Alignment:
Q  18 aaagttgtcatgaaaatggttgttcaaataacacaactctta 59  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  25270508 aaagttgtcatataaatggatgttcaaataacacaactctta 25270467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 42821506 - 42821543
Alignment:
Q  21 gttgtcatgaaaatggttgttcaaataacacaactctt 58  Q
    |||||||  |||||||||||||||||||||||||||||    
T  42821506 gttgtcaataaaatggttgttcaaataacacaactctt 42821543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 13333099 - 13333055
Alignment:
Q  15 tcaaaagttgtcatgaaaatggttgttcaaataacacaactctta 59  Q
    ||||||||||||||  |||| | ||||||||||||||||||||||    
T  13333099 tcaaaagttgtcatataaatcgatgttcaaataacacaactctta 13333055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 17767973 - 17767929
Alignment:
Q  15 tcaaaagttgtcatgaaaatggttgttcaaataacacaactctta 59  Q
    |||||||||||| | ||||||  ||||||||||||||||||||||    
T  17767973 tcaaaagttgtcgtaaaaatgaatgttcaaataacacaactctta 17767929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 32701233 - 32701273
Alignment:
Q  16 caaaagttgtcatgaaaatggttgttcaaataacacaactc 56  Q
    |||||||| ||||  ||||||||||||||||||||||||||    
T  32701233 caaaagttatcatataaatggttgttcaaataacacaactc 32701273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 41056676 - 41056636
Alignment:
Q  15 tcaaaagttgtcatgaaaatggttgttcaaataacacaact 55  Q
    ||||||||||||||  |||||| ||||||||||||||||||    
T  41056676 tcaaaagttgtcatataaatggatgttcaaataacacaact 41056636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 17626128 - 17626172
Alignment:
Q  15 tcaaaagttgtcatgaaaatggttgttcaaataacacaactctta 59  Q
    ||||||||||||||  |||||| ||||||||||||||||||||||    
T  17626128 tcaaaagttgtcatataaatggatgttcaaataacacaactctta 17626172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 7552895 - 7552853
Alignment:
Q  16 caaaagttgtcatgaaaatggttgttcaaataacacaactctt 58  Q
    |||||||||||||  |||||| |||||||||||||||||||||    
T  7552895 caaaagttgtcatctaaatggatgttcaaataacacaactctt 7552853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 17154459 - 17154421
Alignment:
Q  19 aagttgtcatgaaaatggttgttcaaataacacaactct 57  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  17154459 aagttgtcattgaaatggttgttcaaataacacaactct 17154421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 39054730 - 39054774
Alignment:
Q  16 caaaagttgtcatgaaaatggttgttcaaataacacaactcttat 60  Q
    |||||||||||||  |||||| ||||||||||||||||| |||||    
T  39054730 caaaagttgtcatctaaatggatgttcaaataacacaacgcttat 39054774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 59
Target Start/End: Complemental strand, 42475585 - 42475557
Alignment:
Q  31 aaatggttgttcaaataacacaactctta 59  Q
    |||||||||||||||||||||||||||||    
T  42475585 aaatggttgttcaaataacacaactctta 42475557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 10592237 - 10592196
Alignment:
Q  16 caaaagttgtcatgaaaatggttgttcaaataacacaactct 57  Q
    ||||||||||||   |||||||||||||||||||||||||||    
T  10592237 caaaagttgtcaatcaaatggttgttcaaataacacaactct 10592196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 13106624 - 13106665
Alignment:
Q  17 aaaagttgtcatgaaaatggttgttcaaataacacaactctt 58  Q
    |||||||||||   ||||||||||||||||||||||||||||    
T  13106624 aaaagttgtcacctaaatggttgttcaaataacacaactctt 13106665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 39856182 - 39856223
Alignment:
Q  17 aaaagttgtcatgaaaatggttgttcaaataacacaactctt 58  Q
    ||||||| |||| ||||| |||||||||||||||||||||||    
T  39856182 aaaagttatcattaaaatagttgttcaaataacacaactctt 39856223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 7586088 - 7586056
Alignment:
Q  19 aagttgtcatgaaaatggttgttcaaataacac 51  Q
    |||||||||||||| ||||||||||||||||||    
T  7586088 aagttgtcatgaaattggttgttcaaataacac 7586056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 10339026 - 10338985
Alignment:
Q  16 caaaagttgtcatgaaaatggttgttcaaataacacaactct 57  Q
    ||||| || |||| ||||||||||||||||||||||||||||    
T  10339026 caaaaattatcataaaaatggttgttcaaataacacaactct 10338985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 46907337 - 46907381
Alignment:
Q  15 tcaaaagttgtcatgaaaatggttgttcaaataacacaactctta 59  Q
    |||||||||||| |  |||||| ||||||||||||||||||||||    
T  46907337 tcaaaagttgtcgtataaatggatgttcaaataacacaactctta 46907381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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