View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5304_low_5 (Length: 252)
Name: NF5304_low_5
Description: NF5304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5304_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 2231398 - 2231636
Alignment:
| Q |
1 |
aaattagttcatagtagcattttctgttatttaccaaaatcataaataggataaaaataaaaaggnnnnnnnnnnctaggttatctcattataaattgtg |
100 |
Q |
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| T |
2231398 |
aaattatttcatagtagcattttctgttatttac-aaaatcataaataggataaaaataaaaaggttttttt---ctaggttatctcattataaattgtg |
2231493 |
T |
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| Q |
101 |
agtaatttaccaaacaactaataaaaatgaaccagtcatgttcattgttgtttaaggggtaagcctagacctcatcaaattaaaatgatcatttgatagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2231494 |
agtaatttaccaaacaactaataaaaatgaaccagtcatgttcattgttgtttaaggggtaagcctagacctcatcaaattaaaatgatcatttgatagc |
2231593 |
T |
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| Q |
201 |
aataatattcataagttatatgaacagaaagaatgagaataat |
243 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2231594 |
aataatattcataagttatatgaacagaaagaatgagaataat |
2231636 |
T |
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Back To:
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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 91 - 128
Target Start/End: Original strand, 26439484 - 26439521
Alignment:
| Q |
91 |
ataaattgtgagtaatttaccaaacaactaataaaaat |
128 |
Q |
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||||||||||||||||||| | |||||||||||||||| |
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| T |
26439484 |
ataaattgtgagtaatttatccaacaactaataaaaat |
26439521 |
T |
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