View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5305-Insertion-2 (Length: 325)

Name: NF5305-Insertion-2
Description: NF5305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5305-Insertion-2
NF5305-Insertion-2
[»] chr5 (14 HSPs)
chr5 (179-325)||(38180891-38181037)
chr5 (179-325)||(38190094-38190240)
chr5 (179-325)||(38208115-38208261)
chr5 (179-325)||(38217319-38217465)
chr5 (179-325)||(38456251-38456397)
chr5 (6-119)||(38180695-38180808)
chr5 (6-119)||(38190323-38190436)
chr5 (6-119)||(38207919-38208032)
chr5 (6-119)||(38217548-38217661)
chr5 (6-119)||(38456055-38456168)
chr5 (200-325)||(26033199-26033324)
chr5 (6-119)||(26033448-26033561)
chr5 (201-320)||(38447447-38447566)
chr5 (24-103)||(38447179-38447258)
[»] chr4 (2 HSPs)
chr4 (210-321)||(53351321-53351429)
chr4 (14-118)||(53351852-53351956)
[»] chr1 (2 HSPs)
chr1 (210-297)||(38342739-38342826)
chr1 (210-297)||(38446932-38447019)
[»] chr6 (1 HSPs)
chr6 (219-285)||(4121643-4121709)


Alignment Details
Target: chr5 (Bit Score: 131; Significance: 6e-68; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 179 - 325
Target Start/End: Original strand, 38180891 - 38181037
Alignment:
Q  179 gatcatgtcattaatttgtattcagttaccgggaagaagcgataatgacatcaagaacttttggaatgcgagaaaaagaaaacttgaaaagcgtggcttg 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  38180891 gatcatgtcattaatttgtattcagttaccgggaagaagcgataatgacatcaagaacttttggaatgcgagaaaaagaaaacttgaaaagctcggcttg 38180990  T
Q  279 tcacccttccccgacaacatggaacctgatcatgagttgaatagtag 325  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||    
T  38180991 tcacccttccccgacaacatggaaccggatcataagttgaatagtag 38181037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 179 - 325
Target Start/End: Complemental strand, 38190240 - 38190094
Alignment:
Q  179 gatcatgtcattaatttgtattcagttaccgggaagaagcgataatgacatcaagaacttttggaatgcgagaaaaagaaaacttgaaaagcgtggcttg 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  38190240 gatcatgtcattaatttgtattcagttaccgggaagaagcgataatgacatcaagaacttttggaatgcgagaaaaagaaaacttgaaaagctcggcttg 38190141  T
Q  279 tcacccttccccgacaacatggaacctgatcatgagttgaatagtag 325  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||    
T  38190140 tcacccttccccgacaacatggaaccggatcataagttgaatagtag 38190094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 179 - 325
Target Start/End: Original strand, 38208115 - 38208261
Alignment:
Q  179 gatcatgtcattaatttgtattcagttaccgggaagaagcgataatgacatcaagaacttttggaatgcgagaaaaagaaaacttgaaaagcgtggcttg 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  38208115 gatcatgtcattaatttgtattcagttaccgggaagaagcgataatgacatcaagaacttttggaatgcgagaaaaagaaaacttgaaaagctcggcttg 38208214  T
Q  279 tcacccttccccgacaacatggaacctgatcatgagttgaatagtag 325  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||    
T  38208215 tcacccttccccgacaacatggaaccggatcataagttgaatagtag 38208261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 179 - 325
Target Start/End: Complemental strand, 38217465 - 38217319
Alignment:
Q  179 gatcatgtcattaatttgtattcagttaccgggaagaagcgataatgacatcaagaacttttggaatgcgagaaaaagaaaacttgaaaagcgtggcttg 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  38217465 gatcatgtcattaatttgtattcagttaccgggaagaagcgataatgacatcaagaacttttggaatgcgagaaaaagaaaacttgaaaagctcggcttg 38217366  T
Q  279 tcacccttccccgacaacatggaacctgatcatgagttgaatagtag 325  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||    
T  38217365 tcacccttccccgacaacatggaaccggatcataagttgaatagtag 38217319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 179 - 325
Target Start/End: Original strand, 38456251 - 38456397
Alignment:
Q  179 gatcatgtcattaatttgtattcagttaccgggaagaagcgataatgacatcaagaacttttggaatgcgagaaaaagaaaacttgaaaagcgtggcttg 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  38456251 gatcatgtcattaatttgtattcagttaccgggaagaagcgataatgacatcaagaacttttggaatgcgagaaaaagaaaacttgaaaagctcggcttg 38456350  T
Q  279 tcacccttccccgacaacatggaacctgatcatgagttgaatagtag 325  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||    
T  38456351 tcacccttccccgacaacatggaaccggatcataagttgaatagtag 38456397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 6 - 119
Target Start/End: Original strand, 38180695 - 38180808
Alignment:
Q  6 cacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaaactaaagtttttgagttctatataaagtatggtgaattcaaatggtctaagc 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38180695 cacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaatctaaagtttttgagttctatataaagtatggtgaattcaaatggtctaagc 38180794  T
Q  106 tggctcatgaggta 119  Q
    ||||||||||||||    
T  38180795 tggctcatgaggta 38180808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 6 - 119
Target Start/End: Complemental strand, 38190436 - 38190323
Alignment:
Q  6 cacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaaactaaagtttttgagttctatataaagtatggtgaattcaaatggtctaagc 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38190436 cacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaatctaaagtttttgagttctatataaagtatggtgaattcaaatggtctaagc 38190337  T
Q  106 tggctcatgaggta 119  Q
    ||||||||||||||    
T  38190336 tggctcatgaggta 38190323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 6 - 119
Target Start/End: Original strand, 38207919 - 38208032
Alignment:
Q  6 cacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaaactaaagtttttgagttctatataaagtatggtgaattcaaatggtctaagc 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38207919 cacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaatctaaagtttttgagttctatataaagtatggtgaattcaaatggtctaagc 38208018  T
Q  106 tggctcatgaggta 119  Q
    ||||||||||||||    
T  38208019 tggctcatgaggta 38208032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 6 - 119
Target Start/End: Complemental strand, 38217661 - 38217548
Alignment:
Q  6 cacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaaactaaagtttttgagttctatataaagtatggtgaattcaaatggtctaagc 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38217661 cacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaatctaaagtttttgagttctatataaagtatggtgaattcaaatggtctaagc 38217562  T
Q  106 tggctcatgaggta 119  Q
    ||||||||||||||    
T  38217561 tggctcatgaggta 38217548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 6 - 119
Target Start/End: Original strand, 38456055 - 38456168
Alignment:
Q  6 cacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaaactaaagtttttgagttctatataaagtatggtgaattcaaatggtctaagc 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38456055 cacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaatctaaagtttttgagttctatataaagtatggtgaattcaaatggtctaagc 38456154  T
Q  106 tggctcatgaggta 119  Q
    ||||||||||||||    
T  38456155 tggctcatgaggta 38456168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 200 - 325
Target Start/End: Complemental strand, 26033324 - 26033199
Alignment:
Q  200 tcagttaccgggaagaagcgataatgacatcaagaacttttggaatgcgagaaaaagaaaacttgaaaagcgtggcttgtcacccttccccgacaacatg 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  26033324 tcagttaccgggaagaagcgataatgacatcaagaacttttggaacgcgagaaaaagaaaacttgaaaggcgtggcttgtcacccttccctgacaacatg 26033225  T
Q  300 gaacctgatcatgagttgaatagtag 325  Q
    ||||  ||| ||||| ||||||||||    
T  26033224 gaactggatgatgagctgaatagtag 26033199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 6 - 119
Target Start/End: Complemental strand, 26033561 - 26033448
Alignment:
Q  6 cacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaaactaaagtttttgagttctatataaagtatggtgaattcaaatggtctaagc 105  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||| |||||||||||||||||||||||||||||    
T  26033561 cacctgcaaccagatgtgaaaaagggtccatttagtgaagaagaagaaacaaaagtttttgtgttctataaaaagtatggtgaattcaaatggtctaagc 26033462  T
Q  106 tggctcatgaggta 119  Q
    ||||| | ||||||    
T  26033461 tggctgaggaggta 26033448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 201 - 320
Target Start/End: Original strand, 38447447 - 38447566
Alignment:
Q  201 cagttaccgggaagaagcgataatgacatcaagaacttttggaatgcgagaaaaagaaaacttgaaaagcgtggcttgtcacccttccccgacaacatgg 300  Q
    ||||| || ||||||| |||||||||||||||||||||||||||||||||||| ||||||| | ||||| ||||||||||||||||||| ||||||||||    
T  38447447 cagttgcctggaagaaccgataatgacatcaagaacttttggaatgcgagaaagagaaaacataaaaagtgtggcttgtcacccttccctgacaacatgg 38447546  T
Q  301 aacctgatcatgagttgaat 320  Q
    |||  ||| |||||||||||    
T  38447547 aactggatgatgagttgaat 38447566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 103
Target Start/End: Original strand, 38447179 - 38447258
Alignment:
Q  24 aaaaagggtccatttagtgaagaagaaaaaactaaagtttttgagttctatataaagtatggtgaattcaaatggtctaa 103  Q
    |||||||||||||||||| |||||||| ||| |||||| ||| ||||   ||  |||| ||||| |||||||||||||||    
T  38447179 aaaaagggtccatttagtaaagaagaagaaaataaagtctttcagttacgtaagaagtttggtggattcaaatggtctaa 38447258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 210 - 321
Target Start/End: Complemental strand, 53351429 - 53351321
Alignment:
Q  210 ggaagaagcgataatgacatcaagaacttttggaatgcgagaaaaagaaaacttgaaaagcgtggcttgtcacccttccccgacaacatggaacctgatc 309  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    |||||||||| || ||||| |||||||   ||     
T  53351429 ggaagaagcgataatgacatcaagaatttttggaatgcaagaaaaagaaaacttgaaaagcgt---atgtcaccctttcctgacaagatggaactgaatg 53351333  T
Q  310 atgagttgaata 321  Q
    ||||||||||||    
T  53351332 atgagttgaata 53351321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 118
Target Start/End: Complemental strand, 53351956 - 53351852
Alignment:
Q  14 accagatgtgaaaaagggtccatttagtgaagaagaaaaaactaaagtttttgagttctatataaagtatggtgaattcaaatggtctaagctggctcat 113  Q
    |||||||||||| ||||| || |||||||||||||||||||| ||||| |||  ||||| ||  || | ||||||||||||||||||||||||||||||     
T  53351956 accagatgtgaagaaggggccgtttagtgaagaagaaaaaaccaaagtctttcggttctttaacaactttggtgaattcaaatggtctaagctggctcaa 53351857  T
Q  114 gaggt 118  Q
    |||||    
T  53351856 gaggt 53351852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 210 - 297
Target Start/End: Original strand, 38342739 - 38342826
Alignment:
Q  210 ggaagaagcgataatgacatcaagaacttttggaatgcgagaaaaagaaaacttgaaaagcgtggcttgtcacccttccccgacaaca 297  Q
    ||||||| ||||||||||||||||||||||||||| || ||||||||||||| | |||  | | |||||||||||||||| |||||||    
T  38342739 ggaagaaccgataatgacatcaagaacttttggaacgcaagaaaaagaaaacatcaaagacattgcttgtcacccttccctgacaaca 38342826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 210 - 297
Target Start/End: Original strand, 38446932 - 38447019
Alignment:
Q  210 ggaagaagcgataatgacatcaagaacttttggaatgcgagaaaaagaaaacttgaaaagcgtggcttgtcacccttccccgacaaca 297  Q
    ||||||| ||||||||||||||||||||||||||| || ||||||||||||| | |||  | | |||||||||||||||| |||||||    
T  38446932 ggaagaaccgataatgacatcaagaacttttggaacgcaagaaaaagaaaacatcaaagacattgcttgtcacccttccctgacaaca 38447019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 285
Target Start/End: Original strand, 4121643 - 4121709
Alignment:
Q  219 gataatgacatcaagaacttttggaatgcgagaaaaagaaaacttgaaaagcgtggcttgtcaccct 285  Q
    |||||||  |||||||||||||||||||| ||||||||||||  | ||||| ||||| | |||||||    
T  4121643 gataatgctatcaagaacttttggaatgcaagaaaaagaaaatataaaaagagtggcctatcaccct 4121709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University