View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5305_high_1 (Length: 606)
Name: NF5305_high_1
Description: NF5305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5305_high_1 |
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| [»] scaffold0011 (1 HSPs) |
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| [»] scaffold0662 (1 HSPs) |
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Alignment Details
Target: scaffold0011 (Bit Score: 536; Significance: 0; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 18 - 606
Target Start/End: Complemental strand, 242728 - 242140
Alignment:
| Q |
18 |
caatcaaattgagtggtgtaacagtatccttaatcactgaccaagaaaatgcaataagcaaccaatccttcacaacaccagcaacattcatcgtcaaagc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
242728 |
caatcaaattgagtggtgtaacagtatccttaatcactgaccaagaaaatgcaataagcaaccaatccttcacaacaccagcaacattcatcgtcaaagc |
242629 |
T |
|
| Q |
118 |
cgaagtcttcccaacaagcaaaaacacagcaaggttcaaagcaaaagcacacaacgaattgcttccgaaaacccaaaaatcaaaactcaaacttgcttta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
242628 |
cgaagtcttcccaacaagcaaaaacacagcaaggttcaaagcaaaagcacacaacgaattacttccgaaaacccaaaaatcaaaactcaaacttgcttta |
242529 |
T |
|
| Q |
218 |
tccctcaacaaaggatactccataacgaaccaaggaaacgacnnnnnnnccaaacaacaaggagcaatgtagtaaagcgaggtaataggattcaacttaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
242528 |
tccctcaacaaaggatactccataacgaaccaaggaaacgacaaaaaaaccaaacaacaaggagcaatgtagtaaagcgaggtaataggattcaacttaa |
242429 |
T |
|
| Q |
318 |
tccctttcgagttcaaaaggatttgaattaaaaccaacctcgtggcttcaaacgctacagccatgagctgtagcgtaacaccaaagacatcaaacttggc |
417 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
242428 |
tccctttcgagttcaaaagaatttgaattaaaaccaacctcgtggcttcaaacgctacagccatgagctgtagcgtaacaccaaagacatcaaacttggc |
242329 |
T |
|
| Q |
418 |
ttcgccatagtcagctacagcgacgccaagtgatatagaaaccatgttgatcatggtttcttttttaaacgactcttttgtaaaagaaaccccgatggag |
517 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
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| T |
242328 |
ttcgccataggcagctacagcgacgccaagtgatatagaaaccatgttgatcatggtttcttttttaaacgattcttttttaaaagaaaccccgatggag |
242229 |
T |
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| Q |
518 |
taaacggccacgggcataagagcttttagcatttgaatgaatgaaactgacaagtaaatgtaagaagagttggagaacaaaagggaaag |
606 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||| |
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| T |
242228 |
taaacggccacgggcataagagcttttagcatttgaatgaatgaaactgacaagtaaatgtaagcagagtttgagaaccaaagggaaag |
242140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 18 - 177
Target Start/End: Original strand, 47013854 - 47014013
Alignment:
| Q |
18 |
caatcaaattgagtggtgtaacagtatccttaatcactgaccaagaaaatgcaataagcaaccaatccttcacaacaccagcaacattcatcgtcaaagc |
117 |
Q |
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|||||||||| | ||||| ||||||||||||||||| ||||| || |||||||| | |||||||||||| ||||| |||||||||||||| |||||||| |
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| T |
47013854 |
caatcaaattaatcggtgtcacagtatccttaatcaccgaccacgagaatgcaatcaacaaccaatccttaacaaccccagcaacattcatagtcaaagc |
47013953 |
T |
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| Q |
118 |
cgaagtcttcccaacaagcaaaaacacagcaaggttcaaagcaaaagcacacaacgaatt |
177 |
Q |
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||| ||||||||||| | ||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
47013954 |
cgacgtcttcccaaccaacaaaaacacagcaagattcaaagcaaaagcacacagcgaatt |
47014013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0662 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: scaffold0662
Description:
Target: scaffold0662; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 32 - 177
Target Start/End: Original strand, 7 - 152
Alignment:
| Q |
32 |
ggtgtaacagtatccttaatcactgaccaagaaaatgcaataagcaaccaatccttcacaacaccagcaacattcatcgtcaaagccgaagtcttcccaa |
131 |
Q |
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||||| ||||||||||||||||| ||||| || |||||||| | |||||||||||| ||||| |||||||||||||| ||||||||||| |||||||||| |
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| T |
7 |
ggtgtcacagtatccttaatcaccgaccacgagaatgcaatcaacaaccaatccttaacaaccccagcaacattcatagtcaaagccgacgtcttcccaa |
106 |
T |
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| Q |
132 |
caagcaaaaacacagcaaggttcaaagcaaaagcacacaacgaatt |
177 |
Q |
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| T |
107 |
ccaacaaaaacacagcaagattcaaagcaaaagcacacagcgaatt |
152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 32 - 177
Target Start/End: Complemental strand, 49575419 - 49575274
Alignment:
| Q |
32 |
ggtgtaacagtatccttaatcactgaccaagaaaatgcaataagcaaccaatccttcacaacaccagcaacattcatcgtcaaagccgaagtcttcccaa |
131 |
Q |
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||||||||||||||||||||||| ||| ||||| ||||| | | |||||| || |||||||||||||||||||| |||||||| || || ||||||| |
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| T |
49575419 |
ggtgtaacagtatccttaatcacactccatgaaaaagcaatcaaaagccaatctttaacaacaccagcaacattcattgtcaaagcagatgttttcccaa |
49575320 |
T |
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| Q |
132 |
caagcaaaaacacagcaaggttcaaagcaaaagcacacaacgaatt |
177 |
Q |
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|||| | ||| |||||||| ||||||||||| |||||||| ||||| |
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| T |
49575319 |
caagaagaaaaacagcaagattcaaagcaaatgcacacaaagaatt |
49575274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 509 - 581
Target Start/End: Complemental strand, 49574942 - 49574870
Alignment:
| Q |
509 |
ccgatggagtaaacggccacgggcataagagcttttagcatttgaatgaatgaaactgacaagtaaatgtaag |
581 |
Q |
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|||||||| ||||| || || |||||||||||||| ||||||||||| || ||||| || | |||||||||| |
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| T |
49574942 |
ccgatggaataaacagcgacaggcataagagctttaagcatttgaataaaagaaacagagagataaatgtaag |
49574870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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