View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5305_low_10 (Length: 242)

Name: NF5305_low_10
Description: NF5305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5305_low_10
NF5305_low_10
[»] chr1 (16 HSPs)
chr1 (18-238)||(8401226-8401457)
chr1 (203-242)||(50351918-50351957)
chr1 (204-242)||(6314231-6314269)
chr1 (204-242)||(18618950-18618988)
chr1 (204-242)||(23817425-23817463)
chr1 (204-242)||(24636041-24636079)
chr1 (204-242)||(48762244-48762282)
chr1 (204-242)||(49936850-49936888)
chr1 (206-242)||(23174425-23174461)
chr1 (204-242)||(180838-180876)
chr1 (204-242)||(4097130-4097168)
chr1 (204-242)||(16976070-16976108)
chr1 (204-242)||(19897673-19897711)
chr1 (204-242)||(21641615-21641653)
chr1 (204-242)||(25888941-25888979)
chr1 (204-238)||(43452661-43452695)
[»] chr8 (12 HSPs)
chr8 (204-242)||(15227145-15227183)
chr8 (204-242)||(1209771-1209809)
chr8 (204-242)||(4835539-4835577)
chr8 (204-242)||(4840984-4841022)
chr8 (204-242)||(34633234-34633272)
chr8 (204-242)||(39657729-39657767)
chr8 (204-242)||(41099297-41099335)
chr8 (207-242)||(30414029-30414064)
chr8 (204-242)||(1149936-1149974)
chr8 (204-242)||(2751220-2751258)
chr8 (204-242)||(41451220-41451258)
chr8 (204-241)||(10237470-10237507)
[»] chr2 (9 HSPs)
chr2 (206-242)||(18762952-18762988)
chr2 (204-242)||(7487167-7487205)
chr2 (204-242)||(18297189-18297227)
chr2 (204-242)||(39355150-39355188)
chr2 (204-242)||(1292092-1292130)
chr2 (204-242)||(8149946-8149984)
chr2 (204-242)||(8154570-8154608)
chr2 (204-242)||(34464826-34464864)
chr2 (206-242)||(15016481-15016517)
[»] scaffold0074 (1 HSPs)
scaffold0074 (204-242)||(24389-24427)
[»] chr7 (11 HSPs)
chr7 (204-242)||(35737063-35737101)
chr7 (204-242)||(41911025-41911063)
chr7 (204-242)||(46358635-46358673)
chr7 (204-242)||(47340262-47340300)
chr7 (204-242)||(48692035-48692073)
chr7 (204-242)||(763812-763850)
chr7 (204-242)||(16933156-16933194)
chr7 (204-242)||(16938539-16938577)
chr7 (204-242)||(30884135-30884173)
chr7 (204-242)||(31660184-31660222)
chr7 (204-242)||(46572595-46572633)
[»] chr6 (7 HSPs)
chr6 (204-242)||(6900918-6900956)
chr6 (204-242)||(15493289-15493327)
chr6 (204-242)||(33345357-33345395)
chr6 (204-242)||(35121503-35121541)
chr6 (204-238)||(1449661-1449695)
chr6 (204-242)||(7089197-7089235)
chr6 (204-242)||(34869976-34870014)
[»] chr5 (7 HSPs)
chr5 (204-242)||(14394583-14394621)
chr5 (204-242)||(14940269-14940307)
chr5 (204-242)||(26637750-26637788)
chr5 (204-242)||(3883948-3883986)
chr5 (204-242)||(15416779-15416817)
chr5 (204-242)||(34330171-34330209)
chr5 (204-242)||(37456795-37456833)
[»] chr4 (14 HSPs)
chr4 (204-242)||(638979-639017)
chr4 (204-242)||(11786089-11786127)
chr4 (204-242)||(11798256-11798294)
chr4 (204-242)||(13635638-13635676)
chr4 (204-242)||(30597814-30597852)
chr4 (204-242)||(35291461-35291499)
chr4 (204-242)||(45256880-45256918)
chr4 (204-242)||(49425970-49426008)
chr4 (204-242)||(49492425-49492463)
chr4 (204-242)||(50644655-50644693)
chr4 (204-242)||(51921178-51921216)
chr4 (204-242)||(15051049-15051087)
chr4 (204-242)||(27865650-27865688)
chr4 (204-242)||(55765596-55765634)
[»] chr3 (16 HSPs)
chr3 (204-242)||(3475320-3475358)
chr3 (204-242)||(6097597-6097635)
chr3 (204-242)||(9595893-9595931)
chr3 (204-242)||(19284786-19284824)
chr3 (204-242)||(30947824-30947862)
chr3 (204-242)||(50755177-50755215)
chr3 (204-242)||(54379277-54379315)
chr3 (204-241)||(2941839-2941876)
chr3 (206-242)||(19384404-19384440)
chr3 (206-242)||(31853171-31853207)
chr3 (203-238)||(47335151-47335186)
chr3 (204-242)||(9106382-9106420)
chr3 (204-242)||(10986467-10986505)
chr3 (204-242)||(26662451-26662489)
chr3 (204-242)||(46237671-46237709)
chr3 (205-242)||(33413927-33413964)
[»] scaffold0581 (1 HSPs)
scaffold0581 (204-241)||(8334-8371)
[»] scaffold0045 (1 HSPs)
scaffold0045 (207-242)||(33799-33834)
[»] scaffold0571 (1 HSPs)
scaffold0571 (204-242)||(566-604)
[»] scaffold0338 (1 HSPs)
scaffold0338 (204-242)||(6498-6536)


Alignment Details
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 8401226 - 8401457
Alignment:
Q  18 agaacaagtgaaatctttgtcttcaaaatggtttttagcaaaaaagagtgtgacactcttgtttattcaactaatattttacaaatccatgggtaatttt 117  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8401226 agaacaagtgaaatctttgtcgtcaaaatggtttttagctaaaaagagtgtgacactcttgtttattcaactaatattttacaaatccatgggtaatttt 8401325  T
Q  118 agctccataggatgcggaggacat-----------tttttggtgggtcgaattttatgagaaacaaaaatatatagcataatgtttctgggagcagttcc 206  Q
    ||||||||||||||||||||||||           ||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||| |||||    
T  8401326 agctccataggatgcggaggacattttttggtgtatttttggtgggtcaaattttatgagaaaaaaatatatatagcataatgtttctgggagcggttcc 8401425  T
Q  207 ttatgcaccgtacataaatcccaacataattg 238  Q
    ||||| ||||| ||||||||||||||||||||    
T  8401426 ttatgtaccgtgcataaatcccaacataattg 8401457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 242
Target Start/End: Complemental strand, 50351957 - 50351918
Alignment:
Q  203 ttccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  50351957 ttccttatgcaccgtgcataaatcccaacataattgcttc 50351918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 6314269 - 6314231
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  6314269 tccttatgcaccgtatataaatcccaacataattgcttc 6314231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 18618988 - 18618950
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  18618988 tccttatgcaccgtgcataaatcccaacataattgcttc 18618950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 23817463 - 23817425
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  23817463 tccttatgcaccgtgcataaatcccaacataattgcttc 23817425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 24636079 - 24636041
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  24636079 tccttatgcaccgtgcataaatcccaacataattgcttc 24636041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 48762244 - 48762282
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  48762244 tccttatgcaccgtgcataaatcccaacataattgcttc 48762282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 49936850 - 49936888
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  49936850 tccttatgcaccgtgcataaatcccaacataattgcttc 49936888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 242
Target Start/End: Original strand, 23174425 - 23174461
Alignment:
Q  206 cttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||| ||||||||||||||||||||||||    
T  23174425 cttatgcaccgtgcataaatcccaacataattgcttc 23174461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 180876 - 180838
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    ||||||||||||||  |||||||||||||||||||||||    
T  180876 tccttatgcaccgtgtataaatcccaacataattgcttc 180838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 4097130 - 4097168
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||||| | ||||||||||||||||||||||    
T  4097130 tccttatgcaccgtgcttaaatcccaacataattgcttc 4097168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 16976108 - 16976070
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  16976108 tccttatgcaccgtgcataaatcctaacataattgcttc 16976070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 19897673 - 19897711
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||||| || |||||||||||||||||||||    
T  19897673 tccttatgcaccgtgcagaaatcccaacataattgcttc 19897711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 21641615 - 21641653
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||||| || |||||||||||||||||||||    
T  21641615 tccttatgcaccgtgcacaaatcccaacataattgcttc 21641653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 25888941 - 25888979
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  25888941 tccttatgcaccgtgcataaatcctaacataattgcttc 25888979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 238
Target Start/End: Complemental strand, 43452695 - 43452661
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattg 238  Q
    |||||||||||||| ||||||||||||||||||||    
T  43452695 tccttatgcaccgtgcataaatcccaacataattg 43452661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 15227183 - 15227145
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||||||||||||||||||||||||||||||    
T  15227183 tccttatgcaccgtacataaatcccaacataattgcttc 15227145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 1209809 - 1209771
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  1209809 tccttatgcaccgtgcataaatcccaacataattgcttc 1209771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 4835539 - 4835577
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  4835539 tccttatgcaccgtgcataaatcccaacataattgcttc 4835577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 4840984 - 4841022
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  4840984 tccttatgcaccgtgcataaatcccaacataattgcttc 4841022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 34633234 - 34633272
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  34633234 tccttatgcaccgtgcataaatcccaacataattgcttc 34633272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 39657729 - 39657767
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  39657729 tccttatgcaccgtgcataaatcccaacataattgcttc 39657767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 41099335 - 41099297
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  41099335 tccttatgcaccgtgcataaatcccaacataattgcttc 41099297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 242
Target Start/End: Complemental strand, 30414064 - 30414029
Alignment:
Q  207 ttatgcaccgtacataaatcccaacataattgcttc 242  Q
    ||||||||||| ||||||||||||||||||||||||    
T  30414064 ttatgcaccgtgcataaatcccaacataattgcttc 30414029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 1149936 - 1149974
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||||| ||||||| ||||||||||||||||    
T  1149936 tccttatgcaccgtgcataaattccaacataattgcttc 1149974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 2751258 - 2751220
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||||| ||| ||||||||||||||||||||    
T  2751258 tccttatgcaccgtgcatgaatcccaacataattgcttc 2751220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 41451258 - 41451220
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    ||||||||||| || ||||||||||||||||||||||||    
T  41451258 tccttatgcactgtgcataaatcccaacataattgcttc 41451220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 241
Target Start/End: Complemental strand, 10237507 - 10237470
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgctt 241  Q
    ||||||||||||||  ||||||||||||||||||||||    
T  10237507 tccttatgcaccgtgtataaatcccaacataattgctt 10237470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 206 - 242
Target Start/End: Complemental strand, 18762988 - 18762952
Alignment:
Q  206 cttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||||||||||||||||||||||||||||    
T  18762988 cttatgcaccgtacataaatcccaacataattgcttc 18762952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 7487167 - 7487205
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  7487167 tccttatgcaccgtgcataaatcccaacataattgcttc 7487205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 18297189 - 18297227
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  18297189 tccttatgcaccgtgcataaatcccaacataattgcttc 18297227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 39355188 - 39355150
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  39355188 tccttatgcaccgtgcataaatcccaacataattgcttc 39355150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 1292092 - 1292130
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||||| ||||||| ||||||||||||||||    
T  1292092 tccttatgcaccgtgcataaattccaacataattgcttc 1292130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 8149984 - 8149946
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||| | ||||||||||||||||||||||||    
T  8149984 tccttatgcaccatgcataaatcccaacataattgcttc 8149946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 8154608 - 8154570
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||| | ||||||||||||||||||||||||    
T  8154608 tccttatgcaccatgcataaatcccaacataattgcttc 8154570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 34464864 - 34464826
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  34464864 tccttatgcaccgtgcataaatccaaacataattgcttc 34464826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 242
Target Start/End: Original strand, 15016481 - 15016517
Alignment:
Q  206 cttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||| |||||||| |||||||||||||||    
T  15016481 cttatgcaccgtgcataaatctcaacataattgcttc 15016517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 24427 - 24389
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  24427 tccttatgcaccgtgcataaatcccaacataattgcttc 24389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 35737101 - 35737063
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  35737101 tccttatgcaccgtgcataaatcccaacataattgcttc 35737063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 41911025 - 41911063
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  41911025 tccttatgcaccgtgcataaatcccaacataattgcttc 41911063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 46358673 - 46358635
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  46358673 tccttatgcaccgtgcataaatcccaacataattgcttc 46358635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 47340300 - 47340262
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  47340300 tccttatgcaccgtgcataaatcccaacataattgcttc 47340262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 48692073 - 48692035
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  48692073 tccttatgcaccgtgcataaatcccaacataattgcttc 48692035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 763850 - 763812
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    ||||||||||| || ||||||||||||||||||||||||    
T  763850 tccttatgcactgtgcataaatcccaacataattgcttc 763812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 16933156 - 16933194
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||||| |||||||| |||||||||||||||    
T  16933156 tccttatgcaccgtgcataaatctcaacataattgcttc 16933194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 16938539 - 16938577
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||||| |||||||| |||||||||||||||    
T  16938539 tccttatgcaccgtgcataaatctcaacataattgcttc 16938577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 30884135 - 30884173
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  30884135 tccttatgcaccgtgcataaatcctaacataattgcttc 30884173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 31660222 - 31660184
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||||| |||||||| |||||||||||||||    
T  31660222 tccttatgcaccgtgcataaatctcaacataattgcttc 31660184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 46572595 - 46572633
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||| | ||||||||||||||||||||||||    
T  46572595 tccttatgcaccatgcataaatcccaacataattgcttc 46572633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 6900956 - 6900918
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  6900956 tccttatgcaccgtgcataaatcccaacataattgcttc 6900918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 15493327 - 15493289
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  15493327 tccttatgcaccgtgcataaatcccaacataattgcttc 15493289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 33345357 - 33345395
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  33345357 tccttatgcaccgtgcataaatcccaacataattgcttc 33345395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 35121541 - 35121503
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  35121541 tccttatgcaccgtgcataaatcccaacataattgcttc 35121503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 238
Target Start/End: Complemental strand, 1449695 - 1449661
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattg 238  Q
    |||||||||||||| ||||||||||||||||||||    
T  1449695 tccttatgcaccgtgcataaatcccaacataattg 1449661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 7089235 - 7089197
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||| ||||| ||||||||||||||||||||||||    
T  7089235 tccttatgtaccgtgcataaatcccaacataattgcttc 7089197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 34869976 - 34870014
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  34869976 tccttatgcaccgtgcataaatcctaacataattgcttc 34870014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 14394621 - 14394583
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  14394621 tccttatgcaccgtgcataaatcccaacataattgcttc 14394583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 14940269 - 14940307
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  14940269 tccttatgcaccgtgcataaatcccaacataattgcttc 14940307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 26637750 - 26637788
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  26637750 tccttatgcaccgtgcataaatcccaacataattgcttc 26637788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 3883948 - 3883986
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||||| |||||||||||| |||||||||||    
T  3883948 tccttatgcaccgtgcataaatcccaatataattgcttc 3883986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 15416817 - 15416779
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||||| ||||||||||||||| ||||||||    
T  15416817 tccttatgcaccgtgcataaatcccaacatgattgcttc 15416779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 34330209 - 34330171
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||||| ||||||| ||||||||||||||||    
T  34330209 tccttatgcaccgtgcataaattccaacataattgcttc 34330171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 37456833 - 37456795
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||| | ||||||||||||||||||||||||    
T  37456833 tccttatgcaccatgcataaatcccaacataattgcttc 37456795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 639017 - 638979
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  639017 tccttatgcaccgtgcataaatcccaacataattgcttc 638979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 11786127 - 11786089
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  11786127 tccttatgcaccgtgcataaatcccaacataattgcttc 11786089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 11798294 - 11798256
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  11798294 tccttatgcaccgtgcataaatcccaacataattgcttc 11798256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 13635638 - 13635676
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  13635638 tccttatgcaccgtgcataaatcccaacataattgcttc 13635676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 30597852 - 30597814
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  30597852 tccttatgcaccgtgcataaatcccaacataattgcttc 30597814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 35291461 - 35291499
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  35291461 tccttatgcaccgtgcataaatcccaacataattgcttc 35291499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 45256918 - 45256880
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  45256918 tccttatgcaccgtgcataaatcccaacataattgcttc 45256880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 49425970 - 49426008
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  49425970 tccttatgcaccgtgcataaatcccaacataattgcttc 49426008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 49492425 - 49492463
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  49492425 tccttatgcaccgtgcataaatcccaacataattgcttc 49492463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 50644693 - 50644655
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  50644693 tccttatgcaccgtgcataaatcccaacataattgcttc 50644655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 51921178 - 51921216
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  51921178 tccttatgcaccgtgcataaatcccaacataattgcttc 51921216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 15051049 - 15051087
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  15051049 tccttatgcaccgtgcataaatcctaacataattgcttc 15051087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 27865650 - 27865688
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||| | ||||||||||||||||||||||||    
T  27865650 tccttatgcaccatgcataaatcccaacataattgcttc 27865688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 55765634 - 55765596
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||||| |||||||||||| |||||||||||    
T  55765634 tccttatgcaccgtgcataaatcccaatataattgcttc 55765596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 3475320 - 3475358
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  3475320 tccttatgcaccgtgcataaatcccaacataattgcttc 3475358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 6097597 - 6097635
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  6097597 tccttatgcaccgtgcataaatcccaacataattgcttc 6097635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 9595893 - 9595931
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  9595893 tccttatgcaccgtgcataaatcccaacataattgcttc 9595931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 19284824 - 19284786
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  19284824 tccttatgcaccgtgcataaatcccaacataattgcttc 19284786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 30947824 - 30947862
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  30947824 tccttatgcaccgtgcataaatcccaacataattgcttc 30947862  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 50755215 - 50755177
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  50755215 tccttatgcaccgtgcataaatcccaacataattgcttc 50755177  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 54379315 - 54379277
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  54379315 tccttatgcaccgtgcataaatcccaacataattgcttc 54379277  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 204 - 241
Target Start/End: Original strand, 2941839 - 2941876
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgctt 241  Q
    |||||||||||||| |||||||||||||||||||||||    
T  2941839 tccttatgcaccgtgcataaatcccaacataattgctt 2941876  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 242
Target Start/End: Original strand, 19384404 - 19384440
Alignment:
Q  206 cttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||| ||||||||||||||||||||||||    
T  19384404 cttatgcaccgtgcataaatcccaacataattgcttc 19384440  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 242
Target Start/End: Complemental strand, 31853207 - 31853171
Alignment:
Q  206 cttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||| ||||||||||||||||||||||||    
T  31853207 cttatgcaccgtgcataaatcccaacataattgcttc 31853171  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 238
Target Start/End: Complemental strand, 47335186 - 47335151
Alignment:
Q  203 ttccttatgcaccgtacataaatcccaacataattg 238  Q
    ||||||||||||||| ||||||||||||||||||||    
T  47335186 ttccttatgcaccgtgcataaatcccaacataattg 47335151  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 9106420 - 9106382
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||||| |||||||||||| |||||||||||    
T  9106420 tccttatgcaccgtgcataaatcccaatataattgcttc 9106382  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 10986505 - 10986467
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||||| |||||||| |||||||||||||||    
T  10986505 tccttatgcaccgtgcataaatctcaacataattgcttc 10986467  T

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Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 26662451 - 26662489
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    ||||||||||| || ||||||||||||||||||||||||    
T  26662451 tccttatgcactgtgcataaatcccaacataattgcttc 26662489  T

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Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 46237671 - 46237709
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    ||||||| |||||| ||||||||||||||||||||||||    
T  46237671 tccttatacaccgtgcataaatcccaacataattgcttc 46237709  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 242
Target Start/End: Original strand, 33413927 - 33413964
Alignment:
Q  205 ccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  33413927 ccttatgcaccgtgcataaatcccaatataattgcttc 33413964  T

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Target: scaffold0581 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0581
Description:

Target: scaffold0581; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 204 - 241
Target Start/End: Original strand, 8334 - 8371
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgctt 241  Q
    |||||||||||||| |||||||||||||||||||||||    
T  8334 tccttatgcaccgtgcataaatcccaacataattgctt 8371  T

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Target: scaffold0045 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 242
Target Start/End: Complemental strand, 33834 - 33799
Alignment:
Q  207 ttatgcaccgtacataaatcccaacataattgcttc 242  Q
    ||||||||||| ||||||||||||||||||||||||    
T  33834 ttatgcaccgtgcataaatcccaacataattgcttc 33799  T

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Target: scaffold0571 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 566 - 604
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||||| |||||||||||| |||||||||||    
T  566 tccttatgcaccgtgcataaatcccaatataattgcttc 604  T

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Target: scaffold0338 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0338
Description:

Target: scaffold0338; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 6536 - 6498
Alignment:
Q  204 tccttatgcaccgtacataaatcccaacataattgcttc 242  Q
    |||||||||||| | ||||||||||||||||||||||||    
T  6536 tccttatgcaccatgcataaatcccaacataattgcttc 6498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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