View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5305_low_2 (Length: 515)
Name: NF5305_low_2
Description: NF5305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5305_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 30 - 493
Target Start/End: Original strand, 20455890 - 20456353
Alignment:
| Q |
30 |
tccttaatgatatctattcatatttcatgtattttatcattggttgcatgaactctagttaaaacggcagaagtccgattttaaaattttgtacttgatc |
129 |
Q |
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| T |
20455890 |
tccttaatgatatctattcatatttcatgtattttatcattggttgcatgaactctagttaaaacggcaaaagtccgattttaaaattttgtacttgatc |
20455989 |
T |
|
| Q |
130 |
agtttttgaaaatcaagtgggtctaagttgttatcttaattgtctaagttgtatcacaatagtttgcaatcttgtgctaattgatttgttcgttatctga |
229 |
Q |
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| T |
20455990 |
agtttttgaaaatcaagcgggtctaagttgttttcttaattgtctaagttgtatcacaatagtttgcaatcttgtgctaattgatttgttcgttatctga |
20456089 |
T |
|
| Q |
230 |
tttgaaaattttgaacttcggttttcttaattcttagctgaaagtgttgattgatatgttgtttttcagacttctgagaggatattggatgctccgggca |
329 |
Q |
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| T |
20456090 |
tttgaaaattttgaacttcggttttcttaattcttagctgaaagtgttgattgatatgttgtttttcagacttctgagaggatattggatgctccagaca |
20456189 |
T |
|
| Q |
330 |
ttgtggatgactattacctcaatttactggattggggaagtgccaatgttcttgcaattggattaggaaacacagtgtatttatgggatgcatcaaacgg |
429 |
Q |
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| T |
20456190 |
ttgtggatgattattacctcaatttactggattggggaagtgccaatgttcttgcaattggattaggaaacacagtgtatttatgggatgcatcaaacgg |
20456289 |
T |
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| Q |
430 |
ttccacttcagaactcgttaccgttgatgatgaagatggccctatcacatctgtaagttgggct |
493 |
Q |
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| T |
20456290 |
ttccacttcagaactcgttaccgttgatgatgaagatggccctatcacatctgtaagttgggct |
20456353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 129; Significance: 2e-66; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 277 - 493
Target Start/End: Original strand, 1632212 - 1632428
Alignment:
| Q |
277 |
tgattgatatgttgtttttcagacttctgagaggatattggatgctccgggcattgtggatgactattacctcaatttactggattggggaagtgccaat |
376 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||| | | | ||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
1632212 |
tgattgatatgttgtttttcagacttctgagaggacattggatgctccagacctagtggatgactattaccttaatttactggattggggaagcgccaat |
1632311 |
T |
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| Q |
377 |
gttcttgcaattggattaggaaacacagtgtatttatgggatgcatcaaacggttccacttcagaactcgttaccgttgatgatgaagatggccctatca |
476 |
Q |
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| T |
1632312 |
gttcttgcaatagcacttggaaacacagtgtatttgtgggatgcatcaaatggttctacttcagaacttgttactgtcgaagaagaagacggccctatca |
1632411 |
T |
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| Q |
477 |
catctgtaagttgggct |
493 |
Q |
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| T |
1632412 |
cttctgtgagttgggct |
1632428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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