View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5305_low_3 (Length: 477)
Name: NF5305_low_3
Description: NF5305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5305_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 30 - 467
Target Start/End: Original strand, 20455890 - 20456327
Alignment:
| Q |
30 |
tccttaatgatatctattcatatttcatgtattttatcattggttgcatgaactctagttaaaacggcagaagtccgattttaaaattttgtacttgatc |
129 |
Q |
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| T |
20455890 |
tccttaatgatatctattcatatttcatgtattttatcattggttgcatgaactctagttaaaacggcaaaagtccgattttaaaattttgtacttgatc |
20455989 |
T |
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| Q |
130 |
agtttttgaaaatcaagtgggtctaagttgttatcttaattgtctaagttgtatcacaatagtttgcaatcttgtgctaattgatttgttcgttatctga |
229 |
Q |
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| T |
20455990 |
agtttttgaaaatcaagcgggtctaagttgttttcttaattgtctaagttgtatcacaatagtttgcaatcttgtgctaattgatttgttcgttatctga |
20456089 |
T |
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| Q |
230 |
tttgaaaattttgaacttcggttttcttaattcttagctgaaagtgttgattgatatgttgtttttcagacttctgagaggatattggatgctccgggca |
329 |
Q |
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| T |
20456090 |
tttgaaaattttgaacttcggttttcttaattcttagctgaaagtgttgattgatatgttgtttttcagacttctgagaggatattggatgctccagaca |
20456189 |
T |
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| Q |
330 |
ttgtggatgactattacctcaatttactggattggggaagtgccaatgttcttgcaattggattaggaaacacagtgtatttatgggatgcatcaaacgg |
429 |
Q |
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| T |
20456190 |
ttgtggatgattattacctcaatttactggattggggaagtgccaatgttcttgcaattggattaggaaacacagtgtatttatgggatgcatcaaacgg |
20456289 |
T |
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| Q |
430 |
ttccacttcagaactcgttaccgttgatgatgatgatg |
467 |
Q |
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| T |
20456290 |
ttccacttcagaactcgttaccgttgatgatgaagatg |
20456327 |
T |
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Target: chr5 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 277 - 450
Target Start/End: Original strand, 1632212 - 1632385
Alignment:
| Q |
277 |
tgattgatatgttgtttttcagacttctgagaggatattggatgctccgggcattgtggatgactattacctcaatttactggattggggaagtgccaat |
376 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||| | | | ||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
1632212 |
tgattgatatgttgtttttcagacttctgagaggacattggatgctccagacctagtggatgactattaccttaatttactggattggggaagcgccaat |
1632311 |
T |
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| Q |
377 |
gttcttgcaattggattaggaaacacagtgtatttatgggatgcatcaaacggttccacttcagaactcgttac |
450 |
Q |
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| T |
1632312 |
gttcttgcaatagcacttggaaacacagtgtatttgtgggatgcatcaaatggttctacttcagaacttgttac |
1632385 |
T |
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