View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5305_low_4 (Length: 402)
Name: NF5305_low_4
Description: NF5305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5305_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 3e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 140 - 328
Target Start/End: Complemental strand, 26375595 - 26375405
Alignment:
| Q |
140 |
atggtgcaactaatatctcagttttcttttt--tctttaaattgatcgttatacacaatcaaattcagagatacaccaataaaagacacatcaaaacgaa |
237 |
Q |
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| T |
26375595 |
atggtgcaactaatatctcagttttttttttcttctttaaattgatcgttatacacaatcaaattcagagatacaccaataaaagacacatcaaaacgaa |
26375496 |
T |
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| Q |
238 |
gccatgacagaacagtgacaaaaacagaatttcagagctagatcccaacatctagtataataatcataaacgacaaatctaaaacctaata |
328 |
Q |
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| T |
26375495 |
gccataacagaacagtgacaaaaacagaatttcagagctagatcccaacatctagtataataatcataaacgacaaatctaaaacctaata |
26375405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 23 - 98
Target Start/End: Complemental strand, 26375719 - 26375643
Alignment:
| Q |
23 |
gattatcttggaaaa-tggttttcataatagatttgatttgattatagataaaattatttttaaatattcggcaggc |
98 |
Q |
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| T |
26375719 |
gattatcttgggaaagtgtttttcataatagattggatttgattatagataaaattatttttaaatattcggcaggc |
26375643 |
T |
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