View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5305_low_5 (Length: 373)
Name: NF5305_low_5
Description: NF5305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5305_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 11 - 330
Target Start/End: Original strand, 4741704 - 4742024
Alignment:
| Q |
11 |
cacagacctcaagaacatgttgaagtagaaagttagaaactgttcatttgtgatcatcaaaactatttct---aggtaacttaatacccaattaaactaa |
107 |
Q |
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| T |
4741704 |
cacagacctcaaaaacttgttgaagtagaaagttagaaactgttcatttgtcatcatcaaaactatatttttaaggtaatt--attcccaattaaaccaa |
4741801 |
T |
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| Q |
108 |
caaattattgggaaacttgtcacatcatcaaaagacttattttgtttgttaatatgctgtgtttagtaaattgatttgccgtttcattcggtttggaatt |
207 |
Q |
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| T |
4741802 |
caaatcagtgggaaacttgtcacatcattaaaagacttcttttgtttgttaatatgctgtgtttagtaaattgatttgccgtttcattcggtttggaatt |
4741901 |
T |
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| Q |
208 |
caaaataaggaaaattcaaatgtttacatcactttcactttcaatttcactatgtatggtccatgggactggaaaattgaagtgcttccgaacaagttca |
307 |
Q |
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| T |
4741902 |
caaaattaggaaaattcaaatgtttacatcactttcactttcaattttactatctatggtccatgggattggaaaactgaagtgcttccgaacaagttca |
4742001 |
T |
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| Q |
308 |
tcgtctatatggaggctaccaaa |
330 |
Q |
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| T |
4742002 |
tcgtctgtatggaggctaccaaa |
4742024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 165 - 330
Target Start/End: Original strand, 4721031 - 4721196
Alignment:
| Q |
165 |
tgtgtttagtaaattgatttgccgtttcattcggtttggaattcaaaataaggaaaattcaaatgtttacatcactttcactttcaatttcactatgtat |
264 |
Q |
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| T |
4721031 |
tgtgtttagtaaattgatttgccgtttcattcggtttggaattcaaaataaggaaaattcaaatgtttacatcactttcactttcaatttcactatgtat |
4721130 |
T |
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| Q |
265 |
ggtccatgggactggaaaattgaagtgcttccgaacaagttcatcgtctatatggaggctaccaaa |
330 |
Q |
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| T |
4721131 |
ggtccatgggactggaaaactgaagtgcttccgaacaagttcatcgtctttatggaggctaccaaa |
4721196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 4742782 - 4742854
Alignment:
| Q |
14 |
agacctcaagaacatgttgaagtagaaagttagaaactgttcatttgtg--atcatcaaaactatttctaggt |
84 |
Q |
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| T |
4742782 |
agacctcaagaacatgttgaagtataaagttagaaattattcagttgtgtcatcatcaaaactatttccaggt |
4742854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 326 - 373
Target Start/End: Original strand, 4722145 - 4722192
Alignment:
| Q |
326 |
ccaaaatatgataataacttcattgtggattattcgactaggttcaat |
373 |
Q |
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| T |
4722145 |
ccaaaatatgataataacttcattgtagattattcgacgaggttcaat |
4722192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 147 - 250
Target Start/End: Original strand, 4726160 - 4726262
Alignment:
| Q |
147 |
ttttgtttgtt-aatatgctgtgtttagtaaattgatttgccgtttcattcggtttggaattcaaaataaggaaaattcaaatgtttacatcactttcac |
245 |
Q |
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| T |
4726160 |
ttttgtttgtttaatatgc-gagtttagtaaatcgatttgctgtctcattcggtttggaatt-gaaattggaaaaattcagatgtttacaacagtttcac |
4726257 |
T |
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| Q |
246 |
tttca |
250 |
Q |
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||||| |
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| T |
4726258 |
tttca |
4726262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 127
Target Start/End: Original strand, 4722380 - 4722450
Alignment:
| Q |
56 |
atttgtgatcatcaaaactatttctaggtaacttaatacccaattaaactaacaaattattgggaaacttgt |
127 |
Q |
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| T |
4722380 |
atttgtcatcattaaaactatttccaggtaact-actactcaattaaaccaacaaattagtgggaaacttgt |
4722450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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