View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5305_low_6 (Length: 356)
Name: NF5305_low_6
Description: NF5305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5305_low_6 |
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| [»] chr3 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 15 - 356
Target Start/End: Complemental strand, 20456938 - 20456597
Alignment:
| Q |
15 |
acctgtgtgggtattccaaaacttgatggtttcatcgccactgcctccaccagtagctagcaaattcgcttgaaaaggacaccaagcaagagcttttact |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
20456938 |
acctgtgtgggtattccaaaacttgatggtttcatcgccactgcctccaccagtagctagcaaattcgcttggaaaggacaccaagcaagagcttttact |
20456839 |
T |
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| Q |
115 |
gcagatgtatgatcttcaagcctgtgaagccactgtgttggagacctagaagttgatgtacttctatcccagatataaagttgattatcattccctccac |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20456838 |
gcagatgtatgatcttcaagcctgtgaagccactgtgttggagacctagaagttgatgtacttctatcccagatataaagttgattatcattccctccac |
20456739 |
T |
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| Q |
215 |
tggctaattgttgaccagaagccgaccatttcaatccgcaaacttctcgttcatgccctctgtatgtttcaacaatgtgtgctctaattcttacatcatt |
314 |
Q |
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| T |
20456738 |
tggctaattgttgaccagaagccgaccatttcaatccgcaaacttctcgttcatgccctctgtatgtttcaacaatatgtgctctaattcttacatcatt |
20456639 |
T |
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| Q |
315 |
attgataattctaccatccatccctccagttgtgagtgtgtg |
356 |
Q |
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| T |
20456638 |
attgataattctaccatccatccctcctgttgtgagtatgtg |
20456597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 15 - 356
Target Start/End: Complemental strand, 1632988 - 1632647
Alignment:
| Q |
15 |
acctgtgtgggtattccaaaacttgatggtttcatcgccactgcctccaccagtagctagcaaattcgcttgaaaaggacaccaagcaagagcttttact |
114 |
Q |
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||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||| |||||| |
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| T |
1632988 |
acctgtgtgtgtattccaaaacttgatggttcgatcgccactgcctccaccagtagctagcaaattcccttggaatggacaccaagcaagagcctttact |
1632889 |
T |
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| Q |
115 |
gcagatgtatgatcttcaagcctgtgaagccactgtgttggagacctagaagttgatgtacttctatcccagatataaagttgattatcattccctccac |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||| |||||||| |||||| |||||||||||||||||| |
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| T |
1632888 |
gcagatgtatgatcttcaagcctgtgaagccactgtgtaggagaactagaagttgatgtacctctgtcccagatgtaaagtagattatcattccctccac |
1632789 |
T |
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| Q |
215 |
tggctaattgttgaccagaagccgaccatttcaatccgcaaacttctcgttcatgccctctgtatgtttcaacaatgtgtgctctaattcttacatcatt |
314 |
Q |
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|||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1632788 |
tggctaattgttgaccggaagccgaccatttcaatccacaaacttcttgttcatgccctctgtatgtttcaacaatgtgtgctctaattcttacatcatt |
1632689 |
T |
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| Q |
315 |
attgataattctaccatccatccctccagttgtgagtgtgtg |
356 |
Q |
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|||||||||| |||| ||||||||||| ||||||||| |||| |
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| T |
1632688 |
attgataattttaccgtccatccctccggttgtgagtatgtg |
1632647 |
T |
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