View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5305_low_8 (Length: 282)
Name: NF5305_low_8
Description: NF5305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5305_low_8 |
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| [»] scaffold0011 (1 HSPs) |
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| [»] scaffold0662 (1 HSPs) |
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Alignment Details
Target: scaffold0011 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 242137 - 241874
Alignment:
| Q |
1 |
agtaaagtgcaccaatagggaccactgatttaaggtatgtgtctaaagacattgaaattgggtccactactttgaagatgtttacaaggatgtaagcaag |
100 |
Q |
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| T |
242137 |
agtaaagtgcaccaatagggaccactgatttaaggtatgtgtctaaagacattgaaattgggtcaactactttgaagatgtttacaaggatgtaagcaag |
242038 |
T |
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| Q |
101 |
ggaggaacaaaaggccatgtggatcattgttagtgatattgggaatggccaattgtacattttttggtctaggatgtatttgttgtagacaattactgaa |
200 |
Q |
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| T |
242037 |
ggaggaacaaaaggccatgtggatcattgttagtgatattgggaatggccaattgtacattttttggtctaggatgtatttgttgtagacaattactgag |
241938 |
T |
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| Q |
201 |
aaacttaagaaaatccatatggctacatatgtgtatgatagaagcacttttttcataacaccct |
264 |
Q |
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| T |
241937 |
aaacttaagaaaatccatatggctacatatgtgtatgatagaagcacttttttcatcacaccct |
241874 |
T |
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Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 116 - 240
Target Start/End: Complemental strand, 49574727 - 49574603
Alignment:
| Q |
116 |
catgtggatcattgttagtgatattgggaatggccaattgtacattttttggtctaggatgtatttgttgtagacaattactgaaaaacttaagaaaatc |
215 |
Q |
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| T |
49574727 |
catgtggatcattgttagggaaattgggaatggccaattgtacatctttttgtctaagatgtatttgttgtaaacgataacagtgaatgataagaagatc |
49574628 |
T |
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| Q |
216 |
catatggctacatatgtgtatgata |
240 |
Q |
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| T |
49574627 |
catatcgctacgtatgtgtaggata |
49574603 |
T |
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Target: scaffold0662 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0662
Description:
Target: scaffold0662; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 92 - 187
Target Start/End: Original strand, 675 - 770
Alignment:
| Q |
92 |
gtaagcaagggaggaacaaaaggccatgtggatcattgttagtgatattgggaatggccaattgtacattttttggtctaggatgtatttgttgta |
187 |
Q |
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| T |
675 |
gtaagcgagggaagaacaaaaagccatgtgaatcatggttagagagatcgggtaaggccaattgtacatcttacgatctaagatgtatttgttgta |
770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 92 - 187
Target Start/End: Original strand, 47014536 - 47014631
Alignment:
| Q |
92 |
gtaagcaagggaggaacaaaaggccatgtggatcattgttagtgatattgggaatggccaattgtacattttttggtctaggatgtatttgttgta |
187 |
Q |
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| T |
47014536 |
gtaagcgagggaagaacaaaaagccatgtgaatcatggttagagagatcgggtaaggccaattgtacatcttacgatctaagatgtatttgttgta |
47014631 |
T |
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