View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5305_low_9 (Length: 282)
Name: NF5305_low_9
Description: NF5305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5305_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 23 - 264
Target Start/End: Original strand, 10116101 - 10116342
Alignment:
| Q |
23 |
acagagacaaagtttacaatcagcacatagtgaaaggtattagaggtttaagaattcagttagttagaaaaccctagtttaggggtaactaccttggtta |
122 |
Q |
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| T |
10116101 |
acagaaacaaagtttacaatcagcacatagtgaaaggtattagaggtttaagaattcagttagttagaaaaccctagtttaggggtaactaccttggtta |
10116200 |
T |
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| Q |
123 |
acttgtaaaccaagcaatctagtttgttatggagttagttacatatctcaatttctctaagaaaccctaattccataatctagttttacacacaaacttg |
222 |
Q |
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| T |
10116201 |
acttgtaaaccaagcaatctagtttgttatggagttagttacatatctcaatttctctaagaaaccctaattccataatctagttttacacacaaacttg |
10116300 |
T |
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| Q |
223 |
cactgtattctatcaaatggtggaagctaatgtaacaataga |
264 |
Q |
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| T |
10116301 |
cactgtgttctatcaaaaggtggaagctaatgtagcaataga |
10116342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 60 - 174
Target Start/End: Complemental strand, 41591931 - 41591816
Alignment:
| Q |
60 |
tattagaggtttaagaattcagttagttaga-aaaccctagtttaggggtaactaccttggttaacttgtaaaccaagcaatctagtttgttatggagtt |
158 |
Q |
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| T |
41591931 |
tattacaggtttaagaattcaattagttagagaaaccctagtttagtggtaactaccttggttaacttgtaagccaagcaatctagtttgttatggagtt |
41591832 |
T |
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| Q |
159 |
agttacatatctcaat |
174 |
Q |
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| T |
41591831 |
agttacatatctcaat |
41591816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 168 - 237
Target Start/End: Complemental strand, 41591735 - 41591667
Alignment:
| Q |
168 |
tctcaatttctctaagaaaccctaattccataatctagttttacacacaaacttgcactgtattctatca |
237 |
Q |
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| T |
41591735 |
tctcaatttctctaagaa-ccctaattccataaactagttttacacacaaacttgcactttgttctatca |
41591667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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