View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5306_high_10 (Length: 310)
Name: NF5306_high_10
Description: NF5306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5306_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 31708754 - 31708452
Alignment:
| Q |
1 |
tcatccttggagtcattaggccatatatccaattcaatcaccctaacacctctctgaagtgctttgatgatgggggcatcactgcagtcactactaagct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31708754 |
tcatccttggagtcattaggccatatatccaattcaatcaccctaacacctctctgaagtgctttgatgatgggggcatcactgcagtcactactaagct |
31708655 |
T |
|
| Q |
101 |
gatttccagttagatatgaattatgaccagtgaatatgtaataatgtgacaatggtaaactcatatcttggtgcacctgaaatctcacaaagaaacagca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31708654 |
gatttccagttagatatgaattatgaccagtgaatatgtaataatgtgacaatggtaaactcatatcttggtgcacctgaaatctcacaaagaaacagca |
31708555 |
T |
|
| Q |
201 |
ttaagtaaacaaacaccattgtcacaccaacatagttcataaaaattacatacaatataatatcaataattcaacacctatgtgcatgtttggatctgtg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31708554 |
ttaagtaaacaaacaccattgtcacaccaacatagttcataaaaattacatacaatataatatcaataattcaacacctatgtgcatgtttggatctgtg |
31708455 |
T |
|
| Q |
301 |
gtg |
303 |
Q |
| |
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||| |
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| T |
31708454 |
gtg |
31708452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 31012574 - 31012871
Alignment:
| Q |
1 |
tcatccttggagtcattaggccatatatccaattcaatcaccctaacacctctctgaagtgctttgatgatgggggcatcactgcagtcactactaagct |
100 |
Q |
| |
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|||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
31012574 |
tcatccttagagtcgttaggccatatatccaattcaatcactctaacacctctctgaagtgcttcgatgatgggggcatcactgcagtcactactaagct |
31012673 |
T |
|
| Q |
101 |
gatttccagttagatatgaattatgaccagtgaatatgtaataatgtgacaatggtaaactcatatcttggtgcacctgaaatctcacaaagaaacagca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
31012674 |
gatttccagttagatatgaattatgaccagtgaatatgtaataatgtgacaatggtaaactcatatcttggtgcacctgtaatcacacaaagaaacagca |
31012773 |
T |
|
| Q |
201 |
ttaagtaaacaaacaccattgtcacaccaacatagttcataaaaattacatacaatataatatcaataattcaacacctatgtgcatgtttggatctg |
298 |
Q |
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||||||||||||||| |||| || |||||||||||||||||||||||||| |||||||||| ||||||||||||||| | ||||||||||||||||| |
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| T |
31012774 |
ttaagtaaacaaacaacattatctcaccaacatagttcataaaaattacaaacaatataatttcaataattcaacactcaagtgcatgtttggatctg |
31012871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 179
Target Start/End: Complemental strand, 35550296 - 35550120
Alignment:
| Q |
3 |
atccttggagtcattaggccatatatccaattcaatcaccctaacacctctctgaagtgctttgatgatgggggcatcactgcagtcactactaagctga |
102 |
Q |
| |
|
||||||||| |||||||||||| ||||| ||||| ||||| ||||||||||| | ||||| | ||| || || |||||||| || || |||||| |
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| T |
35550296 |
atccttggatgcattaggccataagtccaactcaattacccttacacctctctgcaacgctttcacgattggaatgtcgctgcagtcgctgctcagctga |
35550197 |
T |
|
| Q |
103 |
tttccagttagatatgaattatgaccagtgaatatgtaataatgtgacaatggtaaactcatatcttggtgcacctg |
179 |
Q |
| |
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|| || |||||||| ||||| |||||||| ||||| ||||||| ||||| || || ||||||| ||||||||||| |
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|
| T |
35550196 |
ttcccggttagataggaattgtgaccagtatatatgaaataatgagacaagggcaatgtcatatcatggtgcacctg |
35550120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 149
Target Start/End: Complemental strand, 35521238 - 35521166
Alignment:
| Q |
77 |
catcactgcagtcactactaagctgatttccagttagatatgaattatgaccagtgaatatgtaataatgtga |
149 |
Q |
| |
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|||||||||| ||||| || |||||||| ||||||||||| ||||| || || ||| ||||| |||||||||| |
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| T |
35521238 |
catcactgcaatcactgcttagctgattgccagttagataggaattgtgtcctgtgtatatgaaataatgtga |
35521166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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